Gene annotation
Transcriptome id Sobic.007G123900.1
Synonym Sb07g020080
Functional annotation WD-40 repeat family protein, putative, expressed
UniProt C5YKT5
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF453
NCBI CDD KOG4532; WD40-like repeat containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G78070 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os08g31560.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a006061
Brachypodium KQJ98220
Barley -
Wheat TraesCS7A02G295100 , TraesCS7B02G178000 , TraesCS7D02G290100
Populus -


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cDNA sequences
Sobic.007G123900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G376800 - K13116: DDX41, ATP-dependent RNA helicase DDX41
2 Sobic.002G277300 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
3 Sobic.006G110300 SAM domain containing protein, putative, expressed -
4 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
5 Sobic.002G276900 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
6 Sobic.002G383300 MYST-like histone acetyltransferase 1, putative, expressed K11308: MYST1, MOF, histone acetyltransferase MYST1
7 Sobic.009G143000 DUF803 domain containing, putative, expressed -
8 Sobic.006G051900 expressed protein -
9 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
10 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
11 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
12 Sobic.003G429700 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
14 Sobic.001G498400 - K18655: DDX19, ATP-dependent RNA helicase DDX19/DBP5
15 Sobic.010G029900 leucine carboxyl methyltransferase 1, putative, expressed K15451: PPM2, LCMT2, tRNA wybutosine-synthesizing protein 4
16 Sobic.008G111700 expressed protein -
17 Sobic.005G158300 RWD domain containing protein, expressed K10640: RNF25, E3 ubiquitin-protein ligase RNF25
18 Sobic.001G039500 protein kinase domain containing protein, expressed -
19 Sobic.008G115000 Fibronectin type III domain containing protein, expressed -
20 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2


Gene co-expression network
sample Sobic007G123900 Sobic007G123900 Sobic001G376800 Sobic001G376800 Sobic007G123900--Sobic001G376800 Sobic002G277300 Sobic002G277300 Sobic007G123900--Sobic002G277300 Sobic006G110300 Sobic006G110300 Sobic007G123900--Sobic006G110300 Sobic001G507400 Sobic001G507400 Sobic007G123900--Sobic001G507400 Sobic002G276900 Sobic002G276900 Sobic007G123900--Sobic002G276900 Sobic002G383300 Sobic002G383300 Sobic007G123900--Sobic002G383300 Sobic009G143000 Sobic009G143000 Sobic007G123900--Sobic009G143000 Sobic006G051900 Sobic006G051900 Sobic007G123900--Sobic006G051900 Sobic004G019600 Sobic004G019600 Sobic007G123900--Sobic004G019600 Sobic002G034600 Sobic002G034600 Sobic001G376800--Sobic002G034600 Sobic007G056500 Sobic007G056500 Sobic001G376800--Sobic007G056500 Sobic006G121300 Sobic006G121300 Sobic001G376800--Sobic006G121300 Sobic001G473600 Sobic001G473600 Sobic001G376800--Sobic001G473600 Sobic004G059000 Sobic004G059000 Sobic001G376800--Sobic004G059000 Sobic006G017000 Sobic006G017000 Sobic001G376800--Sobic006G017000 Sobic010G028300 Sobic010G028300 Sobic001G376800--Sobic010G028300 Sobic001G395100 Sobic001G395100 Sobic001G376800--Sobic001G395100 Sobic001G131800 Sobic001G131800 Sobic001G376800--Sobic001G131800 Sobic004G068500 Sobic004G068500 Sobic002G277300--Sobic004G068500 Sobic007G018200 Sobic007G018200 Sobic002G277300--Sobic007G018200 Sobic003G038600 Sobic003G038600 Sobic002G277300--Sobic003G038600 Sobic007G111100 Sobic007G111100 Sobic002G277300--Sobic007G111100 Sobic003G062400 Sobic003G062400 Sobic002G277300--Sobic003G062400 Sobic010G055800 Sobic010G055800 Sobic002G277300--Sobic010G055800 Sobic009G125000 Sobic009G125000 Sobic002G277300--Sobic009G125000 Sobic001G038100 Sobic001G038100 Sobic002G277300--Sobic001G038100 Sobic008G192000 Sobic008G192000 Sobic002G277300--Sobic008G192000 Sobic005G000800 Sobic005G000800 Sobic006G110300--Sobic005G000800 Sobic006G110300--Sobic001G507400 Sobic010G211300 Sobic010G211300 Sobic006G110300--Sobic010G211300 Sobic002G272600 Sobic002G272600 Sobic006G110300--Sobic002G272600 Sobic004G013600 Sobic004G013600 Sobic006G110300--Sobic004G013600 Sobic006G110300--Sobic003G038600 Sobic006G261100 Sobic006G261100 Sobic006G110300--Sobic006G261100 Sobic006G110300--Sobic001G376800 Sobic008G001100 Sobic008G001100 Sobic006G110300--Sobic008G001100 Sobic001G507400--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic001G507400--Sobic007G117100 Sobic007G191700 Sobic007G191700 Sobic001G507400--Sobic007G191700 Sobic006G120800 Sobic006G120800 Sobic001G507400--Sobic006G120800 Sobic009G258400 Sobic009G258400 Sobic001G507400--Sobic009G258400 Sobic002G014700 Sobic002G014700 Sobic001G507400--Sobic002G014700 Sobic003G420700 Sobic003G420700 Sobic001G507400--Sobic003G420700 Sobic002G204000 Sobic002G204000 Sobic001G507400--Sobic002G204000 Sobic010G154000 Sobic010G154000 Sobic001G507400--Sobic010G154000 Sobic002G276900--Sobic006G261100 Sobic006G099800 Sobic006G099800 Sobic002G276900--Sobic006G099800 Sobic009G100300 Sobic009G100300 Sobic002G276900--Sobic009G100300 Sobic003G416600 Sobic003G416600 Sobic002G276900--Sobic003G416600 Sobic002G121000 Sobic002G121000 Sobic002G276900--Sobic002G121000 Sobic009G034400 Sobic009G034400 Sobic002G276900--Sobic009G034400 Sobic001G512900 Sobic001G512900 Sobic002G276900--Sobic001G512900 Sobic010G253100 Sobic010G253100 Sobic002G276900--Sobic010G253100 Sobic002G179500 Sobic002G179500 Sobic002G276900--Sobic002G179500 Sobic003G114500 Sobic003G114500 Sobic002G383300--Sobic003G114500 Sobic001G216100 Sobic001G216100 Sobic002G383300--Sobic001G216100 Sobic002G383300--Sobic006G121300 Sobic002G383300--Sobic010G028300 Sobic009G083200 Sobic009G083200 Sobic002G383300--Sobic009G083200 Sobic002G383300--Sobic007G056500 Sobic002G383300--Sobic001G376800 Sobic007G075900 Sobic007G075900 Sobic002G383300--Sobic007G075900 Sobic006G049100 Sobic006G049100 Sobic002G383300--Sobic006G049100 Sobic002G084300 Sobic002G084300 Sobic009G143000--Sobic002G084300 Sobic003G405700 Sobic003G405700 Sobic009G143000--Sobic003G405700 Sobic009G143000--Sobic001G038100 Sobic009G252800 Sobic009G252800 Sobic009G143000--Sobic009G252800 Sobic009G143000--Sobic002G272600 Sobic001G439600 Sobic001G439600 Sobic009G143000--Sobic001G439600 Sobic009G050700 Sobic009G050700 Sobic009G143000--Sobic009G050700 Sobic003G101300 Sobic003G101300 Sobic009G143000--Sobic003G101300 Sobic003G247900 Sobic003G247900 Sobic009G143000--Sobic003G247900 Sobic007G050300 Sobic007G050300 Sobic006G051900--Sobic007G050300 Sobic006G278200 Sobic006G278200 Sobic006G051900--Sobic006G278200 Sobic006G051900--Sobic006G120800 Sobic010G197800 Sobic010G197800 Sobic006G051900--Sobic010G197800 Sobic001G472100 Sobic001G472100 Sobic006G051900--Sobic001G472100 Sobic009G137900 Sobic009G137900 Sobic006G051900--Sobic009G137900 Sobic002G095700 Sobic002G095700 Sobic006G051900--Sobic002G095700 Sobic006G051900--Sobic006G049100 Sobic005G046900 Sobic005G046900 Sobic006G051900--Sobic005G046900 Sobic004G019600--Sobic002G204000 Sobic001G346300 Sobic001G346300 Sobic004G019600--Sobic001G346300 Sobic001G114500 Sobic001G114500 Sobic004G019600--Sobic001G114500 Sobic010G220900 Sobic010G220900 Sobic004G019600--Sobic010G220900 Sobic006G087100 Sobic006G087100 Sobic004G019600--Sobic006G087100 Sobic001G152000 Sobic001G152000 Sobic004G019600--Sobic001G152000 Sobic004G019600--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic004G019600--Sobic004G212700 Sobic009G231900 Sobic009G231900 Sobic004G019600--Sobic009G231900
Octagon: transcription factors


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