Gene annotation
Transcriptome id Sobic.002G277300.1
Synonym Sb02g031050
Functional annotation zinc RING finger protein, putative, expressed
UniProt C5X6T7
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF172
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology K19045; E3 ubiquitin-protein ligase BIG BROTHER and related proteins
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G19910 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g36460.1 : zinc RING finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a047816 , Zm00025a014451
Brachypodium -
Barley HORVU7Hr1G057310.1 , HORVU7Hr1G057310.2 , HORVU5Hr1G082790.1 , HORVU5Hr1G082790.3 , HORVU5Hr1G082790.2 , HORVU5Hr1G082790.5 , HORVU5Hr1G082790.4 , HORVU5Hr1G082790.7 , HORVU5Hr1G082790.6 , HORVU5Hr1G082790.8 , HORVU5Hr1G082790.9 , HORVU5Hr1G082790.12 , HORVU5Hr1G082790.14 , HORVU5Hr1G082790.11 , HORVU5Hr1G082790.10 , HORVU5Hr1G082790.13 , HORVU7Hr1G057310.11
Wheat TraesCS5A02G325400 , TraesCS5A02G325400 , TraesCS5B02G325800 , TraesCS5D02G286700 , TraesCS5D02G331600 , TraesCS7B02G170500 , TraesCS7B02G170500 , TraesCS7B02G170500 , TraesCS7B02G170500 , TraesCS7B02G170500 , TraesCS7D02G271800 , TraesCS7D02G271800 , TraesCS7D02G271800 , TraesCS7D02G271800 , TraesCS7A02G271500 , TraesCS7A02G271500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G068500 CUE domain containing protein, expressed -
2 Sobic.007G018200 RNA recognition motif containing protein, putative, expressed -
3 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
4 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
5 Sobic.003G062400 PHD finger protein, putative, expressed -
6 Sobic.010G055800 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
7 Sobic.009G125000 cyclin-dependent kinase C-1, putative, expressed K08819: cyclin-dependent kinase 12/13
8 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
9 Sobic.008G192000 yippee zinc-binding protein, putative, expressed -
10 Sobic.006G120800 transglutaminase, putative, expressed -
11 Sobic.006G051900 expressed protein -
12 Sobic.007G050300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
13 Sobic.001G131800 expressed protein K15186: ELL-associated factor
14 Sobic.009G031200 expressed protein -
15 Sobic.005G187500 GRF-interacting factor 2, putative, expressed -
16 Sobic.002G348600 zinc finger family protein, putative, expressed -
17 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
18 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
19 Sobic.007G123900 WD-40 repeat family protein, putative, expressed -
20 Sobic.001G472100 frigida, putative, expressed -


Gene co-expression network
sample Sobic002G277300 Sobic002G277300 Sobic004G068500 Sobic004G068500 Sobic002G277300--Sobic004G068500 Sobic007G018200 Sobic007G018200 Sobic002G277300--Sobic007G018200 Sobic003G038600 Sobic003G038600 Sobic002G277300--Sobic003G038600 Sobic007G111100 Sobic007G111100 Sobic002G277300--Sobic007G111100 Sobic003G062400 Sobic003G062400 Sobic002G277300--Sobic003G062400 Sobic010G055800 Sobic010G055800 Sobic002G277300--Sobic010G055800 Sobic009G125000 Sobic009G125000 Sobic002G277300--Sobic009G125000 Sobic001G038100 Sobic001G038100 Sobic002G277300--Sobic001G038100 Sobic008G192000 Sobic008G192000 Sobic002G277300--Sobic008G192000 Sobic004G068500--Sobic007G111100 Sobic002G262700 Sobic002G262700 Sobic004G068500--Sobic002G262700 Sobic001G005600 Sobic001G005600 Sobic004G068500--Sobic001G005600 Sobic002G177000 Sobic002G177000 Sobic004G068500--Sobic002G177000 Sobic007G046200 Sobic007G046200 Sobic004G068500--Sobic007G046200 Sobic001G042200 Sobic001G042200 Sobic004G068500--Sobic001G042200 Sobic007G042900 Sobic007G042900 Sobic004G068500--Sobic007G042900 Sobic003G051200 Sobic003G051200 Sobic004G068500--Sobic003G051200 Sobic001G517500 Sobic001G517500 Sobic004G068500--Sobic001G517500 Sobic003G004500 Sobic003G004500 Sobic007G018200--Sobic003G004500 Sobic007G018200--Sobic001G517500 Sobic007G018200--Sobic001G005600 Sobic004G160700 Sobic004G160700 Sobic007G018200--Sobic004G160700 Sobic007G018200--Sobic007G046200 Sobic007G018200--Sobic004G068500 Sobic004G180900 Sobic004G180900 Sobic007G018200--Sobic004G180900 Sobic007G018200--Sobic002G277300 Sobic008G160500 Sobic008G160500 Sobic007G018200--Sobic008G160500 Sobic008G111700 Sobic008G111700 Sobic003G038600--Sobic008G111700 Sobic003G038600--Sobic007G111100 Sobic010G017000 Sobic010G017000 Sobic003G038600--Sobic010G017000 Sobic002G272600 Sobic002G272600 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic009G258400 Sobic009G258400 Sobic003G038600--Sobic009G258400 Sobic003G247900 Sobic003G247900 Sobic003G038600--Sobic003G247900 Sobic003G005200 Sobic003G005200 Sobic003G038600--Sobic003G005200 Sobic010G235200 Sobic010G235200 Sobic003G038600--Sobic010G235200 Sobic010G202600 Sobic010G202600 Sobic007G111100--Sobic010G202600 Sobic007G111100--Sobic002G262700 Sobic006G267300 Sobic006G267300 Sobic007G111100--Sobic006G267300 Sobic001G143500 Sobic001G143500 Sobic007G111100--Sobic001G143500 Sobic001G390500 Sobic001G390500 Sobic007G111100--Sobic001G390500 Sobic004G283000 Sobic004G283000 Sobic007G111100--Sobic004G283000 Sobic007G111100--Sobic004G068500 Sobic001G131800 Sobic001G131800 Sobic007G111100--Sobic001G131800 Sobic003G205501 Sobic003G205501 Sobic007G111100--Sobic003G205501 Sobic003G253400 Sobic003G253400 Sobic003G062400--Sobic003G253400 Sobic003G062400--Sobic008G160500 Sobic004G145600 Sobic004G145600 Sobic003G062400--Sobic004G145600 Sobic003G062400--Sobic003G038600 Sobic003G062400--Sobic001G005600 Sobic003G062400--Sobic004G068500 Sobic003G062400--Sobic009G125000 Sobic002G267400 Sobic002G267400 Sobic003G062400--Sobic002G267400 Sobic002G357900 Sobic002G357900 Sobic003G062400--Sobic002G357900 Sobic010G055800--Sobic002G262700 Sobic010G055800--Sobic001G042200 Sobic004G345400 Sobic004G345400 Sobic010G055800--Sobic004G345400 Sobic010G055800--Sobic004G180900 Sobic010G187600 Sobic010G187600 Sobic010G055800--Sobic010G187600 Sobic003G123000 Sobic003G123000 Sobic010G055800--Sobic003G123000 Sobic009G092400 Sobic009G092400 Sobic010G055800--Sobic009G092400 Sobic006G186400 Sobic006G186400 Sobic010G055800--Sobic006G186400 Sobic010G055800--Sobic004G068500 Sobic009G059400 Sobic009G059400 Sobic009G125000--Sobic009G059400 Sobic009G125000--Sobic004G345400 Sobic001G472100 Sobic001G472100 Sobic009G125000--Sobic001G472100 Sobic009G125000--Sobic004G180900 Sobic005G040900 Sobic005G040900 Sobic009G125000--Sobic005G040900 Sobic009G125000--Sobic001G042200 Sobic009G040800 Sobic009G040800 Sobic009G125000--Sobic009G040800 Sobic009G125000--Sobic003G062400 Sobic005G198200 Sobic005G198200 Sobic009G125000--Sobic005G198200 Sobic002G204000 Sobic002G204000 Sobic001G038100--Sobic002G204000 Sobic001G309100 Sobic001G309100 Sobic001G038100--Sobic001G309100 Sobic001G507400 Sobic001G507400 Sobic001G038100--Sobic001G507400 Sobic006G120800 Sobic006G120800 Sobic001G038100--Sobic006G120800 Sobic007G117100 Sobic007G117100 Sobic001G038100--Sobic007G117100 Sobic003G420700 Sobic003G420700 Sobic001G038100--Sobic003G420700 Sobic004G186000 Sobic004G186000 Sobic001G038100--Sobic004G186000 Sobic006G261100 Sobic006G261100 Sobic001G038100--Sobic006G261100 Sobic004G260400 Sobic004G260400 Sobic001G038100--Sobic004G260400 Sobic002G084300 Sobic002G084300 Sobic008G192000--Sobic002G084300 Sobic006G254600 Sobic006G254600 Sobic008G192000--Sobic006G254600 Sobic001G028400 Sobic001G028400 Sobic008G192000--Sobic001G028400 Sobic006G175400 Sobic006G175400 Sobic008G192000--Sobic006G175400 Sobic009G198100 Sobic009G198100 Sobic008G192000--Sobic009G198100 Sobic008G192000--Sobic001G390500 Sobic010G033400 Sobic010G033400 Sobic008G192000--Sobic010G033400 Sobic007G205000 Sobic007G205000 Sobic008G192000--Sobic007G205000 Sobic001G512900 Sobic001G512900 Sobic008G192000--Sobic001G512900
Octagon: transcription factors


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