Gene annotation
Transcriptome id Sobic.010G029900.2
Synonym Sb10g002720
Functional annotation leucine carboxyl methyltransferase 1, putative, expressed
UniProt C5Z3S2
Pfam PF04072
Panther DB PTHR13600 PTHR13600:SF6
NCBI CDD KOG2918; Carboxymethyl transferase
KEGG Orthology K15451; PPM2, LCMT2, tRNA wybutosine-synthesizing protein 4
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT1G02100 : Leucine carboxyl methyltransferase
RAP-DB (Rice) LOC_Os06g04820.1 : leucine carboxyl methyltransferase 1, putative, expressed
MaizeGDB (Corn) Zm00025a041461
Brachypodium KQK19924
Barley HORVU7Hr1G018670.3 , HORVU7Hr1G018670.7 , HORVU7Hr1G018670.8 , HORVU7Hr1G018670.2 , HORVU7Hr1G018670.1 , HORVU7Hr1G018670.6 , HORVU7Hr1G018670.4
Wheat TraesCS7A02G083400 , TraesCS4A02G381700 , TraesCS7D02G078100
Populus -


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cDNA sequences
Sobic.010G029900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
2 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
3 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
4 Sobic.007G041300 expressed protein -
5 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
6 Sobic.005G015450 - -
7 Sobic.006G121300 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
8 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
9 Sobic.007G102700 - -
10 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
11 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
12 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
13 Sobic.001G386300 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.006G014100 serine-rich 25 kDa antigen protein, putative, expressed -
15 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
16 Sobic.001G010300 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.002G361400 frigida, putative, expressed -
18 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
19 Sobic.001G497900 XS domain containing protein, expressed -
20 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4


Gene co-expression network
sample Sobic010G029900 Sobic010G029900 Sobic003G121300 Sobic003G121300 Sobic010G029900--Sobic003G121300 Sobic007G191700 Sobic007G191700 Sobic010G029900--Sobic007G191700 Sobic010G237900 Sobic010G237900 Sobic010G029900--Sobic010G237900 Sobic007G041300 Sobic007G041300 Sobic010G029900--Sobic007G041300 Sobic010G095700 Sobic010G095700 Sobic010G029900--Sobic010G095700 Sobic005G015450 Sobic005G015450 Sobic010G029900--Sobic005G015450 Sobic006G121300 Sobic006G121300 Sobic010G029900--Sobic006G121300 Sobic007G075900 Sobic007G075900 Sobic010G029900--Sobic007G075900 Sobic007G102700 Sobic007G102700 Sobic010G029900--Sobic007G102700 Sobic001G114500 Sobic001G114500 Sobic003G121300--Sobic001G114500 Sobic003G121300--Sobic010G237900 Sobic003G121300--Sobic010G029900 Sobic005G160400 Sobic005G160400 Sobic003G121300--Sobic005G160400 Sobic003G132000 Sobic003G132000 Sobic003G121300--Sobic003G132000 Sobic001G487100 Sobic001G487100 Sobic003G121300--Sobic001G487100 Sobic004G156800 Sobic004G156800 Sobic003G121300--Sobic004G156800 Sobic002G361400 Sobic002G361400 Sobic003G121300--Sobic002G361400 Sobic009G164000 Sobic009G164000 Sobic003G121300--Sobic009G164000 Sobic007G191700--Sobic010G237900 Sobic007G091600 Sobic007G091600 Sobic007G191700--Sobic007G091600 Sobic004G129300 Sobic004G129300 Sobic007G191700--Sobic004G129300 Sobic001G395100 Sobic001G395100 Sobic007G191700--Sobic001G395100 Sobic005G079800 Sobic005G079800 Sobic007G191700--Sobic005G079800 Sobic010G279700 Sobic010G279700 Sobic007G191700--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic007G191700--Sobic006G118700 Sobic007G191700--Sobic007G041300 Sobic001G473600 Sobic001G473600 Sobic007G191700--Sobic001G473600 Sobic010G237900--Sobic004G129300 Sobic010G237900--Sobic007G191700 Sobic001G002600 Sobic001G002600 Sobic010G237900--Sobic001G002600 Sobic007G084100 Sobic007G084100 Sobic010G237900--Sobic007G084100 Sobic002G425500 Sobic002G425500 Sobic010G237900--Sobic002G425500 Sobic006G014100 Sobic006G014100 Sobic010G237900--Sobic006G014100 Sobic010G237900--Sobic003G121300 Sobic010G237900--Sobic004G156800 Sobic010G145800 Sobic010G145800 Sobic010G237900--Sobic010G145800 Sobic007G041300--Sobic007G102700 Sobic007G041300--Sobic001G473600 Sobic007G041300--Sobic007G191700 Sobic004G036300 Sobic004G036300 Sobic007G041300--Sobic004G036300 Sobic009G137700 Sobic009G137700 Sobic007G041300--Sobic009G137700 Sobic003G438900 Sobic003G438900 Sobic007G041300--Sobic003G438900 Sobic004G088200 Sobic004G088200 Sobic007G041300--Sobic004G088200 Sobic007G041300--Sobic005G079800 Sobic003G427100 Sobic003G427100 Sobic007G041300--Sobic003G427100 Sobic007G056500 Sobic007G056500 Sobic010G095700--Sobic007G056500 Sobic010G095700--Sobic001G473600 Sobic006G261100 Sobic006G261100 Sobic010G095700--Sobic006G261100 Sobic001G390500 Sobic001G390500 Sobic010G095700--Sobic001G390500 Sobic002G034600 Sobic002G034600 Sobic010G095700--Sobic002G034600 Sobic001G497900 Sobic001G497900 Sobic010G095700--Sobic001G497900 Sobic007G111100 Sobic007G111100 Sobic010G095700--Sobic007G111100 Sobic003G355000 Sobic003G355000 Sobic010G095700--Sobic003G355000 Sobic001G469800 Sobic001G469800 Sobic010G095700--Sobic001G469800 Sobic003G422900 Sobic003G422900 Sobic005G015450--Sobic003G422900 Sobic002G268400 Sobic002G268400 Sobic005G015450--Sobic002G268400 Sobic005G015450--Sobic006G014100 Sobic005G015450--Sobic007G191700 Sobic001G094900 Sobic001G094900 Sobic005G015450--Sobic001G094900 Sobic006G270900 Sobic006G270900 Sobic005G015450--Sobic006G270900 Sobic006G101700 Sobic006G101700 Sobic005G015450--Sobic006G101700 Sobic003G264200 Sobic003G264200 Sobic005G015450--Sobic003G264200 Sobic008G153500 Sobic008G153500 Sobic005G015450--Sobic008G153500 Sobic006G121300--Sobic001G395100 Sobic006G121300--Sobic002G034600 Sobic001G216100 Sobic001G216100 Sobic006G121300--Sobic001G216100 Sobic010G028300 Sobic010G028300 Sobic006G121300--Sobic010G028300 Sobic006G121300--Sobic007G056500 Sobic006G121300--Sobic001G473600 Sobic008G179700 Sobic008G179700 Sobic006G121300--Sobic008G179700 Sobic003G401100 Sobic003G401100 Sobic006G121300--Sobic003G401100 Sobic006G121300--Sobic005G160400 Sobic004G353200 Sobic004G353200 Sobic007G075900--Sobic004G353200 Sobic001G392300 Sobic001G392300 Sobic007G075900--Sobic001G392300 Sobic009G177500 Sobic009G177500 Sobic007G075900--Sobic009G177500 Sobic009G044800 Sobic009G044800 Sobic007G075900--Sobic009G044800 Sobic008G014500 Sobic008G014500 Sobic007G075900--Sobic008G014500 Sobic004G274200 Sobic004G274200 Sobic007G075900--Sobic004G274200 Sobic007G075900--Sobic003G401100 Sobic004G084300 Sobic004G084300 Sobic007G075900--Sobic004G084300 Sobic009G124700 Sobic009G124700 Sobic007G075900--Sobic009G124700 Sobic007G102700--Sobic007G041300 Sobic007G102700--Sobic004G156800 Sobic007G102700--Sobic010G237900 Sobic007G102700--Sobic004G129300 Sobic007G102700--Sobic007G191700 Sobic001G244300 Sobic001G244300 Sobic007G102700--Sobic001G244300 Sobic007G102700--Sobic001G473600 Sobic010G186600 Sobic010G186600 Sobic007G102700--Sobic010G186600 Sobic007G102700--Sobic001G114500
Octagon: transcription factors


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