Gene annotation
Transcriptome id Sobic.005G158300.1
Synonym Sb05g022090
Functional annotation RWD domain containing protein, expressed
UniProt C5Y4U7
Pfam PF13639 PF05773
Panther DB PTHR13198
NCBI CDD KOG4445; Uncharacterized conserved protein, contains RWD domain
KEGG Orthology K10640; RNF25, E3 ubiquitin-protein ligase RNF25
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G60300 : RWD domain-containing protein
RAP-DB (Rice) LOC_Os11g35870.2 : RWD domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033824
Brachypodium KQJ88183 , KQJ88182
Barley HORVU4Hr1G036670.1 , HORVU4Hr1G036670.2 , HORVU4Hr1G036670.3
Wheat TraesCS4D02G163900 , TraesCS4A02G146300 , TraesCS4B02G156000
Populus -


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cDNA sequences
Sobic.005G158300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G131900 - K18177: cytochrome c oxidase assembly factor 4
2 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
3 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
4 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
5 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
6 Sobic.004G252900 transcription factor IIA large subunit, putative, expressed K03122: TFIIA1, GTF2A1, transcription initiation factor TFIIA large subunit
7 Sobic.002G047700 CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed -
8 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
9 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
10 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
11 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
12 Sobic.002G257200 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
13 Sobic.002G185900 zinc finger protein-related, putative, expressed -
14 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
15 Sobic.004G167200 nucleoside-diphosphate-sugar epimerase, putative, expressed -
16 Sobic.010G009800 OsFBX182 - F-box domain containing protein, expressed -
17 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
18 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
19 Sobic.007G093800 expressed protein -
20 Sobic.004G316700 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic005G158300 Sobic005G158300 Sobic009G131900 Sobic009G131900 Sobic005G158300--Sobic009G131900 Sobic005G160400 Sobic005G160400 Sobic005G158300--Sobic005G160400 Sobic008G124900 Sobic008G124900 Sobic005G158300--Sobic008G124900 Sobic009G092400 Sobic009G092400 Sobic005G158300--Sobic009G092400 Sobic010G209000 Sobic010G209000 Sobic005G158300--Sobic010G209000 Sobic004G252900 Sobic004G252900 Sobic005G158300--Sobic004G252900 Sobic002G047700 Sobic002G047700 Sobic005G158300--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic005G158300--Sobic006G180000 Sobic003G121300 Sobic003G121300 Sobic005G158300--Sobic003G121300 Sobic003G104000 Sobic003G104000 Sobic009G131900--Sobic003G104000 Sobic006G270600 Sobic006G270600 Sobic009G131900--Sobic006G270600 Sobic004G316700 Sobic004G316700 Sobic009G131900--Sobic004G316700 Sobic007G042900 Sobic007G042900 Sobic009G131900--Sobic007G042900 Sobic003G182300 Sobic003G182300 Sobic009G131900--Sobic003G182300 Sobic010G235200 Sobic010G235200 Sobic009G131900--Sobic010G235200 Sobic006G131000 Sobic006G131000 Sobic009G131900--Sobic006G131000 Sobic008G129600 Sobic008G129600 Sobic009G131900--Sobic008G129600 Sobic010G264000 Sobic010G264000 Sobic009G131900--Sobic010G264000 Sobic005G160400--Sobic009G092400 Sobic007G084100 Sobic007G084100 Sobic005G160400--Sobic007G084100 Sobic010G237900 Sobic010G237900 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic002G347000 Sobic002G347000 Sobic005G160400--Sobic002G347000 Sobic001G473600 Sobic001G473600 Sobic005G160400--Sobic001G473600 Sobic010G265300 Sobic010G265300 Sobic005G160400--Sobic010G265300 Sobic006G121300 Sobic006G121300 Sobic005G160400--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic005G160400--Sobic001G114500 Sobic007G093800 Sobic007G093800 Sobic008G124900--Sobic007G093800 Sobic003G119700 Sobic003G119700 Sobic008G124900--Sobic003G119700 Sobic006G033200 Sobic006G033200 Sobic008G124900--Sobic006G033200 Sobic001G096000 Sobic001G096000 Sobic008G124900--Sobic001G096000 Sobic010G278200 Sobic010G278200 Sobic008G124900--Sobic010G278200 Sobic008G124900--Sobic006G131000 Sobic008G124900--Sobic003G104000 Sobic010G249100 Sobic010G249100 Sobic008G124900--Sobic010G249100 Sobic009G068500 Sobic009G068500 Sobic008G124900--Sobic009G068500 Sobic007G218000 Sobic007G218000 Sobic009G092400--Sobic007G218000 Sobic009G092400--Sobic005G160400 Sobic009G044800 Sobic009G044800 Sobic009G092400--Sobic009G044800 Sobic009G249700 Sobic009G249700 Sobic009G092400--Sobic009G249700 Sobic007G125000 Sobic007G125000 Sobic009G092400--Sobic007G125000 Sobic004G209700 Sobic004G209700 Sobic009G092400--Sobic004G209700 Sobic002G303600 Sobic002G303600 Sobic009G092400--Sobic002G303600 Sobic009G092400--Sobic006G180000 Sobic007G132100 Sobic007G132100 Sobic009G092400--Sobic007G132100 Sobic007G075900 Sobic007G075900 Sobic010G209000--Sobic007G075900 Sobic006G101700 Sobic006G101700 Sobic010G209000--Sobic006G101700 Sobic010G209000--Sobic008G124900 Sobic001G515100 Sobic001G515100 Sobic010G209000--Sobic001G515100 Sobic006G017000 Sobic006G017000 Sobic010G209000--Sobic006G017000 Sobic007G166400 Sobic007G166400 Sobic010G209000--Sobic007G166400 Sobic008G050800 Sobic008G050800 Sobic010G209000--Sobic008G050800 Sobic001G360200 Sobic001G360200 Sobic010G209000--Sobic001G360200 Sobic001G392300 Sobic001G392300 Sobic010G209000--Sobic001G392300 Sobic006G196300 Sobic006G196300 Sobic004G252900--Sobic006G196300 Sobic002G185900 Sobic002G185900 Sobic004G252900--Sobic002G185900 Sobic003G264100 Sobic003G264100 Sobic004G252900--Sobic003G264100 Sobic002G117400 Sobic002G117400 Sobic004G252900--Sobic002G117400 Sobic003G379200 Sobic003G379200 Sobic004G252900--Sobic003G379200 Sobic010G275400 Sobic010G275400 Sobic004G252900--Sobic010G275400 Sobic006G039400 Sobic006G039400 Sobic004G252900--Sobic006G039400 Sobic004G028100 Sobic004G028100 Sobic004G252900--Sobic004G028100 Sobic001G019800 Sobic001G019800 Sobic004G252900--Sobic001G019800 Sobic002G047700--Sobic006G180000 Sobic010G020400 Sobic010G020400 Sobic002G047700--Sobic010G020400 Sobic001G007000 Sobic001G007000 Sobic002G047700--Sobic001G007000 Sobic001G031100 Sobic001G031100 Sobic002G047700--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic002G047700--Sobic007G167900 Sobic008G070800 Sobic008G070800 Sobic002G047700--Sobic008G070800 Sobic001G014800 Sobic001G014800 Sobic002G047700--Sobic001G014800 Sobic003G264200 Sobic003G264200 Sobic002G047700--Sobic003G264200 Sobic002G047700--Sobic009G044800 Sobic006G180000--Sobic002G303600 Sobic006G180000--Sobic002G047700 Sobic006G180000--Sobic003G264100 Sobic010G223300 Sobic010G223300 Sobic006G180000--Sobic010G223300 Sobic006G180000--Sobic009G092400 Sobic006G180000--Sobic001G007000 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic006G180000--Sobic004G028100 Sobic003G121300--Sobic001G114500 Sobic003G121300--Sobic010G237900 Sobic010G029900 Sobic010G029900 Sobic003G121300--Sobic010G029900 Sobic003G121300--Sobic005G160400 Sobic003G132000 Sobic003G132000 Sobic003G121300--Sobic003G132000 Sobic001G487100 Sobic001G487100 Sobic003G121300--Sobic001G487100 Sobic004G156800 Sobic004G156800 Sobic003G121300--Sobic004G156800 Sobic002G361400 Sobic002G361400 Sobic003G121300--Sobic002G361400 Sobic009G164000 Sobic009G164000 Sobic003G121300--Sobic009G164000
Octagon: transcription factors


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