Gene annotation
Transcriptome id Sobic.001G498400.1
Synonym Sb01g046570, LOS4
Functional annotation -
UniProt A0A097PM11 , C5WXS7
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF318
NCBI CDD KOG0332; ATP-dependent RNA helicase
KEGG Orthology K18655; DDX19, ATP-dependent RNA helicase DDX19/DBP5
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G53110 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g06220.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a000730
Brachypodium KQK23557
Barley HORVU4Hr1G072920.1 , HORVU4Hr1G072920.2 , HORVU4Hr1G072920.3 , HORVU4Hr1G072920.4
Wheat TraesCS4D02G272900 , TraesCS4B02G274200 , TraesCSU02G076700 , TraesCS4A02G031800 , TraesCS5B02G534600 , TraesCS4A02G340500 , TraesCS5D02G532700
Populus -


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cDNA sequences
Sobic.001G498400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G058700 metal cation transporter, putative, expressed -
2 Sobic.003G382900 signal recognition particle 72 kDa protein, putative, expressed K03108: signal recognition particle subunit SRP72
3 Sobic.002G385300 helix-loop-helix DNA-binding domain containing protein, expressed -
4 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
5 Sobic.008G111700 expressed protein -
6 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
7 Sobic.003G407900 OsFBX32 - F-box domain containing protein, expressed -
8 Sobic.003G189700 thioredoxin, putative, expressed -
9 Sobic.002G276900 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
10 Sobic.002G419000 AGC_AGC_other_RS6K_like.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K04688: ribosomal protein S6 kinase beta
11 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
12 Sobic.001G398950 - -
13 Sobic.006G099800 signal recognition particle 19 kDa protein, putative, expressed K03105: signal recognition particle subunit SRP19
14 Sobic.004G039300 phosphatidate cytidylyltransferase family protein, putative, expressed K00902: dolichol kinase
15 Sobic.003G130600 MazG nucleotide pyrophosphohydrolase domain containing protein, expressed K11755: phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase
16 Sobic.007G123900 WD-40 repeat family protein, putative, expressed -
17 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
18 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
19 Sobic.001G285300 expressed protein -
20 Sobic.004G083000 CRAL/TRIO domain containing protein, expressed -


Gene co-expression network
sample Sobic001G498400 Sobic001G498400 Sobic008G058700 Sobic008G058700 Sobic001G498400--Sobic008G058700 Sobic003G382900 Sobic003G382900 Sobic001G498400--Sobic003G382900 Sobic002G385300 Sobic002G385300 Sobic001G498400--Sobic002G385300 Sobic006G261100 Sobic006G261100 Sobic001G498400--Sobic006G261100 Sobic008G111700 Sobic008G111700 Sobic001G498400--Sobic008G111700 Sobic003G031200 Sobic003G031200 Sobic001G498400--Sobic003G031200 Sobic003G407900 Sobic003G407900 Sobic001G498400--Sobic003G407900 Sobic003G189700 Sobic003G189700 Sobic001G498400--Sobic003G189700 Sobic002G276900 Sobic002G276900 Sobic001G498400--Sobic002G276900 Sobic003G410400 Sobic003G410400 Sobic008G058700--Sobic003G410400 Sobic004G083000 Sobic004G083000 Sobic008G058700--Sobic004G083000 Sobic003G126800 Sobic003G126800 Sobic008G058700--Sobic003G126800 Sobic003G252900 Sobic003G252900 Sobic008G058700--Sobic003G252900 Sobic009G070200 Sobic009G070200 Sobic008G058700--Sobic009G070200 Sobic003G043400 Sobic003G043400 Sobic008G058700--Sobic003G043400 Sobic002G044000 Sobic002G044000 Sobic008G058700--Sobic002G044000 Sobic003G358300 Sobic003G358300 Sobic008G058700--Sobic003G358300 Sobic009G160200 Sobic009G160200 Sobic008G058700--Sobic009G160200 Sobic009G160600 Sobic009G160600 Sobic003G382900--Sobic009G160600 Sobic001G421400 Sobic001G421400 Sobic003G382900--Sobic001G421400 Sobic010G238700 Sobic010G238700 Sobic003G382900--Sobic010G238700 Sobic006G225300 Sobic006G225300 Sobic003G382900--Sobic006G225300 Sobic002G090700 Sobic002G090700 Sobic003G382900--Sobic002G090700 Sobic003G148900 Sobic003G148900 Sobic003G382900--Sobic003G148900 Sobic001G161900 Sobic001G161900 Sobic003G382900--Sobic001G161900 Sobic006G222400 Sobic006G222400 Sobic003G382900--Sobic006G222400 Sobic003G038600 Sobic003G038600 Sobic003G382900--Sobic003G038600 Sobic002G390400 Sobic002G390400 Sobic002G385300--Sobic002G390400 Sobic002G252900 Sobic002G252900 Sobic002G385300--Sobic002G252900 Sobic002G385300--Sobic008G111700 Sobic008G116600 Sobic008G116600 Sobic002G385300--Sobic008G116600 Sobic002G385300--Sobic001G498400 Sobic009G030400 Sobic009G030400 Sobic002G385300--Sobic009G030400 Sobic002G385300--Sobic006G261100 Sobic001G135500 Sobic001G135500 Sobic002G385300--Sobic001G135500 Sobic002G062500 Sobic002G062500 Sobic002G385300--Sobic002G062500 Sobic001G038100 Sobic001G038100 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic006G261100--Sobic002G276900 Sobic007G117100 Sobic007G117100 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G120800 Sobic006G120800 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100 Sobic001G285300 Sobic001G285300 Sobic008G111700--Sobic001G285300 Sobic008G111700--Sobic003G038600 Sobic001G448200 Sobic001G448200 Sobic008G111700--Sobic001G448200 Sobic001G349400 Sobic001G349400 Sobic008G111700--Sobic001G349400 Sobic003G247900 Sobic003G247900 Sobic008G111700--Sobic003G247900 Sobic008G111700--Sobic003G031200 Sobic008G111700--Sobic003G043400 Sobic006G094600 Sobic006G094600 Sobic008G111700--Sobic006G094600 Sobic008G111700--Sobic006G261100 Sobic010G088300 Sobic010G088300 Sobic003G031200--Sobic010G088300 Sobic004G242100 Sobic004G242100 Sobic003G031200--Sobic004G242100 Sobic002G359900 Sobic002G359900 Sobic003G031200--Sobic002G359900 Sobic003G031200--Sobic008G111700 Sobic002G129200 Sobic002G129200 Sobic003G031200--Sobic002G129200 Sobic003G031200--Sobic002G044000 Sobic003G031200--Sobic003G043400 Sobic001G402600 Sobic001G402600 Sobic003G031200--Sobic001G402600 Sobic003G031200--Sobic001G285300 Sobic003G192000 Sobic003G192000 Sobic003G407900--Sobic003G192000 Sobic003G407900--Sobic002G385300 Sobic001G458200 Sobic001G458200 Sobic003G407900--Sobic001G458200 Sobic003G407900--Sobic002G276900 Sobic003G407900--Sobic001G498400 Sobic003G407900--Sobic006G261100 Sobic002G403200 Sobic002G403200 Sobic003G407900--Sobic002G403200 Sobic006G096300 Sobic006G096300 Sobic003G407900--Sobic006G096300 Sobic010G051500 Sobic010G051500 Sobic003G407900--Sobic010G051500 Sobic010G017000 Sobic010G017000 Sobic003G189700--Sobic010G017000 Sobic003G189700--Sobic004G083000 Sobic003G189700--Sobic009G160200 Sobic006G217700 Sobic006G217700 Sobic003G189700--Sobic006G217700 Sobic002G236200 Sobic002G236200 Sobic003G189700--Sobic002G236200 Sobic002G395600 Sobic002G395600 Sobic003G189700--Sobic002G395600 Sobic002G121000 Sobic002G121000 Sobic003G189700--Sobic002G121000 Sobic003G189700--Sobic003G038600 Sobic003G189700--Sobic010G238700 Sobic002G276900--Sobic006G261100 Sobic006G099800 Sobic006G099800 Sobic002G276900--Sobic006G099800 Sobic009G100300 Sobic009G100300 Sobic002G276900--Sobic009G100300 Sobic003G416600 Sobic003G416600 Sobic002G276900--Sobic003G416600 Sobic002G276900--Sobic002G121000 Sobic009G034400 Sobic009G034400 Sobic002G276900--Sobic009G034400 Sobic001G512900 Sobic001G512900 Sobic002G276900--Sobic001G512900 Sobic010G253100 Sobic010G253100 Sobic002G276900--Sobic010G253100 Sobic002G179500 Sobic002G179500 Sobic002G276900--Sobic002G179500
Octagon: transcription factors


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