Gene annotation
Transcriptome id Sobic.003G382900.1
Synonym Sb03g042250
Functional annotation signal recognition particle 72 kDa protein, putative, expressed
UniProt C5XEQ3
Pfam PF17004 PF08492
Panther DB PTHR14094 PTHR14094:SF9
NCBI CDD KOG2376; Signal recognition particle, subunit Srp72
KEGG Orthology K03108; signal recognition particle subunit SRP72
Gene Ontology GO:0008312; 7S RNA binding GO:0006614SRP-dependent cotranslational protein targeting to membrane


Orthologs (automatic annotation)
TAIR AT1G67680 : SRP72 RNA-binding domain
RAP-DB (Rice) LOC_Os01g66560.1 : signal recognition particle 72 kDa protein, putative, expressed
MaizeGDB (Corn) Zm00025a026494
Brachypodium PNT73350 , PNT73351 , PNT73349 , KQK10967 , KQK10966
Barley HORVU3Hr1G090360.1 , HORVU3Hr1G090360.3 , HORVU3Hr1G090360.2
Wheat TraesCS3B02G436000 , TraesCS3A02G402600 , TraesCS3D02G397600
Populus -


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cDNA sequences
Sobic.003G382900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G160600 Yip1 domain containing protein, expressed -
2 Sobic.001G421400 expressed protein -
3 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
4 Sobic.006G225300 expressed protein -
5 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
6 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
7 Sobic.001G161900 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
8 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
9 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
10 Sobic.002G040700 tetratricopeptide repeat, putative, expressed -
11 Sobic.001G048700 TBC domain containing protein, expressed -
12 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
13 Sobic.006G002500 basic salivary proline-rich protein 2 precursor, putative, expressed -
14 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
15 Sobic.002G378300 ADP-ribosylation factor, putative, expressed K07952: ADP-ribosylation factor related protein 1
16 Sobic.008G134900 translocon-associated protein beta domain containing protein, expressed K13250: translocon-associated protein subunit beta
17 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
18 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
19 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
20 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E


Gene co-expression network
sample Sobic003G382900 Sobic003G382900 Sobic009G160600 Sobic009G160600 Sobic003G382900--Sobic009G160600 Sobic001G421400 Sobic001G421400 Sobic003G382900--Sobic001G421400 Sobic010G238700 Sobic010G238700 Sobic003G382900--Sobic010G238700 Sobic006G225300 Sobic006G225300 Sobic003G382900--Sobic006G225300 Sobic002G090700 Sobic002G090700 Sobic003G382900--Sobic002G090700 Sobic003G148900 Sobic003G148900 Sobic003G382900--Sobic003G148900 Sobic001G161900 Sobic001G161900 Sobic003G382900--Sobic001G161900 Sobic006G222400 Sobic006G222400 Sobic003G382900--Sobic006G222400 Sobic003G038600 Sobic003G038600 Sobic003G382900--Sobic003G038600 Sobic001G005600 Sobic001G005600 Sobic009G160600--Sobic001G005600 Sobic009G160600--Sobic001G161900 Sobic009G160600--Sobic003G382900 Sobic004G323700 Sobic004G323700 Sobic009G160600--Sobic004G323700 Sobic003G005200 Sobic003G005200 Sobic009G160600--Sobic003G005200 Sobic003G150900 Sobic003G150900 Sobic009G160600--Sobic003G150900 Sobic010G129600 Sobic010G129600 Sobic009G160600--Sobic010G129600 Sobic007G056500 Sobic007G056500 Sobic009G160600--Sobic007G056500 Sobic001G042200 Sobic001G042200 Sobic009G160600--Sobic001G042200 Sobic001G313500 Sobic001G313500 Sobic001G421400--Sobic001G313500 Sobic010G243400 Sobic010G243400 Sobic001G421400--Sobic010G243400 Sobic001G421400--Sobic003G382900 Sobic001G421400--Sobic001G161900 Sobic003G200600 Sobic003G200600 Sobic001G421400--Sobic003G200600 Sobic007G056100 Sobic007G056100 Sobic001G421400--Sobic007G056100 Sobic001G512400 Sobic001G512400 Sobic001G421400--Sobic001G512400 Sobic001G421400--Sobic003G148900 Sobic010G261600 Sobic010G261600 Sobic001G421400--Sobic010G261600 Sobic010G238700--Sobic006G222400 Sobic001G529000 Sobic001G529000 Sobic010G238700--Sobic001G529000 Sobic009G036900 Sobic009G036900 Sobic010G238700--Sobic009G036900 Sobic001G126200 Sobic001G126200 Sobic010G238700--Sobic001G126200 Sobic010G238700--Sobic003G382900 Sobic004G203100 Sobic004G203100 Sobic010G238700--Sobic004G203100 Sobic003G007500 Sobic003G007500 Sobic010G238700--Sobic003G007500 Sobic008G132800 Sobic008G132800 Sobic010G238700--Sobic008G132800 Sobic001G010700 Sobic001G010700 Sobic010G238700--Sobic001G010700 Sobic001G294900 Sobic001G294900 Sobic006G225300--Sobic001G294900 Sobic003G201900 Sobic003G201900 Sobic006G225300--Sobic003G201900 Sobic010G193800 Sobic010G193800 Sobic006G225300--Sobic010G193800 Sobic009G083200 Sobic009G083200 Sobic006G225300--Sobic009G083200 Sobic001G439600 Sobic001G439600 Sobic006G225300--Sobic001G439600 Sobic002G256300 Sobic002G256300 Sobic006G225300--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic006G225300--Sobic001G532100 Sobic004G104900 Sobic004G104900 Sobic006G225300--Sobic004G104900 Sobic009G135600 Sobic009G135600 Sobic006G225300--Sobic009G135600 Sobic003G116600 Sobic003G116600 Sobic002G090700--Sobic003G116600 Sobic010G007400 Sobic010G007400 Sobic002G090700--Sobic010G007400 Sobic003G217100 Sobic003G217100 Sobic002G090700--Sobic003G217100 Sobic004G159000 Sobic004G159000 Sobic002G090700--Sobic004G159000 Sobic003G152900 Sobic003G152900 Sobic002G090700--Sobic003G152900 Sobic004G066800 Sobic004G066800 Sobic002G090700--Sobic004G066800 Sobic001G309500 Sobic001G309500 Sobic002G090700--Sobic001G309500 Sobic002G078400 Sobic002G078400 Sobic002G090700--Sobic002G078400 Sobic001G031900 Sobic001G031900 Sobic002G090700--Sobic001G031900 Sobic003G148900--Sobic003G200600 Sobic007G117800 Sobic007G117800 Sobic003G148900--Sobic007G117800 Sobic002G027800 Sobic002G027800 Sobic003G148900--Sobic002G027800 Sobic007G012900 Sobic007G012900 Sobic003G148900--Sobic007G012900 Sobic008G110500 Sobic008G110500 Sobic003G148900--Sobic008G110500 Sobic002G423800 Sobic002G423800 Sobic003G148900--Sobic002G423800 Sobic003G148900--Sobic001G421400 Sobic003G128300 Sobic003G128300 Sobic003G148900--Sobic003G128300 Sobic003G224300 Sobic003G224300 Sobic003G148900--Sobic003G224300 Sobic001G161900--Sobic009G160600 Sobic001G161900--Sobic010G129600 Sobic001G161900--Sobic001G421400 Sobic001G161900--Sobic001G005600 Sobic001G161900--Sobic010G261600 Sobic001G161900--Sobic001G313500 Sobic003G053800 Sobic003G053800 Sobic001G161900--Sobic003G053800 Sobic001G161900--Sobic010G243400 Sobic001G161900--Sobic001G512400 Sobic006G222400--Sobic010G238700 Sobic006G222400--Sobic001G126200 Sobic006G222400--Sobic003G217100 Sobic006G222400--Sobic008G132800 Sobic008G137600 Sobic008G137600 Sobic006G222400--Sobic008G137600 Sobic002G428200 Sobic002G428200 Sobic006G222400--Sobic002G428200 Sobic001G105100 Sobic001G105100 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic010G017000 Sobic010G017000 Sobic006G222400--Sobic010G017000 Sobic008G111700 Sobic008G111700 Sobic003G038600--Sobic008G111700 Sobic007G111100 Sobic007G111100 Sobic003G038600--Sobic007G111100 Sobic003G038600--Sobic010G017000 Sobic002G272600 Sobic002G272600 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic009G258400 Sobic009G258400 Sobic003G038600--Sobic009G258400 Sobic003G247900 Sobic003G247900 Sobic003G038600--Sobic003G247900 Sobic003G038600--Sobic003G005200 Sobic010G235200 Sobic010G235200 Sobic003G038600--Sobic010G235200
Octagon: transcription factors


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