Gene annotation
Transcriptome id Sobic.002G329700.1
Synonym Sb02g035620
Functional annotation ribosomal protein L28 protein, putative, expressed
UniProt C5XAT5
Pfam PF00830
Panther DB PTHR13528
NCBI CDD KOG3278; Mitochondrial/chloroplast ribosomal protein L28
KEGG Orthology K02902; RP-L28, MRPL28, large subunit ribosomal protein L28
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G31460 : Ribosomal L28 family
RAP-DB (Rice) LOC_Os07g36090.3 : ribosomal protein L28 protein, putative, expressed
MaizeGDB (Corn) Zm00025a048311 , Zm00025a014854
Brachypodium KQK15865 , KQK15867 , KQK15866
Barley HORVU2Hr1G043970.4 , HORVU2Hr1G043970.1 , HORVU2Hr1G043970.3 , HORVU2Hr1G043970.2
Wheat TraesCS2D02G220700 , TraesCS2A02G214900 , TraesCS2B02G239900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G088100 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
2 Sobic.002G278600 peptidyl-prolyl cis-trans isomerase, putative, expressed -
3 Sobic.003G396800 expressed protein K17413: small subunit ribosomal protein S35
4 Sobic.003G295700 hydrolase, acting on carbon-nitrogen, putative, expressed -
5 Sobic.004G010700 expressed protein -
6 Sobic.010G241600 RNASEH2A - Putative ribonuclease H2 large subunit, expressed K10743: ribonuclease H2 subunit A
7 Sobic.004G288100 HSPC171 protein, putative, expressed -
8 Sobic.006G120200 Rf1, mitochondrial precursor, putative, expressed -
9 Sobic.006G129000 ATP/GTP binding protein, putative, expressed -
10 Sobic.010G059700 galactosyltransferase family protein, putative, expressed -
11 Sobic.009G228600 CHCH domain containing protein, expressed K18183: cytochrome c oxidase assembly protein subunit 19
12 Sobic.008G050700 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
13 Sobic.001G466600 expressed protein -
14 Sobic.004G264700 ATP synthase F1, delta subunit family protein, putative, expressed K02137: ATPeF0O, ATP5O, F-type H+-transporting ATPase subunit O
15 Sobic.002G129200 DNA-directed RNA polymerase subunit, putative, expressed K03014: RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2
16 Sobic.003G041400 aminoacyl-tRNA synthetase, putative, expressed -
17 Sobic.005G102500 expressed protein -
18 Sobic.001G214900 expressed protein -
19 Sobic.009G150900 FabA-like domain containing protein, expressed K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
20 Sobic.002G083800 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A


Gene co-expression network
sample Sobic002G329700 Sobic002G329700 Sobic002G088100 Sobic002G088100 Sobic002G329700--Sobic002G088100 Sobic002G278600 Sobic002G278600 Sobic002G329700--Sobic002G278600 Sobic003G396800 Sobic003G396800 Sobic002G329700--Sobic003G396800 Sobic003G295700 Sobic003G295700 Sobic002G329700--Sobic003G295700 Sobic004G010700 Sobic004G010700 Sobic002G329700--Sobic004G010700 Sobic010G241600 Sobic010G241600 Sobic002G329700--Sobic010G241600 Sobic004G288100 Sobic004G288100 Sobic002G329700--Sobic004G288100 Sobic006G120200 Sobic006G120200 Sobic002G329700--Sobic006G120200 Sobic006G129000 Sobic006G129000 Sobic002G329700--Sobic006G129000 Sobic002G088100--Sobic002G329700 Sobic002G088100--Sobic003G396800 Sobic004G264700 Sobic004G264700 Sobic002G088100--Sobic004G264700 Sobic001G199800 Sobic001G199800 Sobic002G088100--Sobic001G199800 Sobic002G088100--Sobic004G288100 Sobic001G370500 Sobic001G370500 Sobic002G088100--Sobic001G370500 Sobic007G140600 Sobic007G140600 Sobic002G088100--Sobic007G140600 Sobic009G228600 Sobic009G228600 Sobic002G088100--Sobic009G228600 Sobic008G050700 Sobic008G050700 Sobic002G088100--Sobic008G050700 Sobic004G350200 Sobic004G350200 Sobic002G278600--Sobic004G350200 Sobic010G059700 Sobic010G059700 Sobic002G278600--Sobic010G059700 Sobic002G278600--Sobic002G329700 Sobic002G306600 Sobic002G306600 Sobic002G278600--Sobic002G306600 Sobic002G278600--Sobic006G120200 Sobic002G278600--Sobic003G396800 Sobic002G278600--Sobic008G050700 Sobic010G038900 Sobic010G038900 Sobic002G278600--Sobic010G038900 Sobic009G063800 Sobic009G063800 Sobic002G278600--Sobic009G063800 Sobic001G143900 Sobic001G143900 Sobic003G396800--Sobic001G143900 Sobic003G396800--Sobic009G228600 Sobic003G396800--Sobic009G063800 Sobic002G182000 Sobic002G182000 Sobic003G396800--Sobic002G182000 Sobic003G120700 Sobic003G120700 Sobic003G396800--Sobic003G120700 Sobic001G203600 Sobic001G203600 Sobic003G396800--Sobic001G203600 Sobic001G033600 Sobic001G033600 Sobic003G396800--Sobic001G033600 Sobic002G193500 Sobic002G193500 Sobic003G396800--Sobic002G193500 Sobic003G004800 Sobic003G004800 Sobic003G396800--Sobic003G004800 Sobic002G332200 Sobic002G332200 Sobic003G295700--Sobic002G332200 Sobic009G206600 Sobic009G206600 Sobic003G295700--Sobic009G206600 Sobic003G295700--Sobic002G329700 Sobic003G122800 Sobic003G122800 Sobic003G295700--Sobic003G122800 Sobic003G295700--Sobic002G278600 Sobic001G286100 Sobic001G286100 Sobic003G295700--Sobic001G286100 Sobic008G118300 Sobic008G118300 Sobic003G295700--Sobic008G118300 Sobic008G017700 Sobic008G017700 Sobic003G295700--Sobic008G017700 Sobic009G224600 Sobic009G224600 Sobic003G295700--Sobic009G224600 Sobic009G201800 Sobic009G201800 Sobic004G010700--Sobic009G201800 Sobic009G258500 Sobic009G258500 Sobic004G010700--Sobic009G258500 Sobic002G054000 Sobic002G054000 Sobic004G010700--Sobic002G054000 Sobic002G101000 Sobic002G101000 Sobic004G010700--Sobic002G101000 Sobic002G277200 Sobic002G277200 Sobic004G010700--Sobic002G277200 Sobic006G129900 Sobic006G129900 Sobic004G010700--Sobic006G129900 Sobic001G382200 Sobic001G382200 Sobic004G010700--Sobic001G382200 Sobic009G234400 Sobic009G234400 Sobic004G010700--Sobic009G234400 Sobic009G104100 Sobic009G104100 Sobic004G010700--Sobic009G104100 Sobic001G466600 Sobic001G466600 Sobic010G241600--Sobic001G466600 Sobic010G237800 Sobic010G237800 Sobic010G241600--Sobic010G237800 Sobic003G282700 Sobic003G282700 Sobic010G241600--Sobic003G282700 Sobic001G141700 Sobic001G141700 Sobic010G241600--Sobic001G141700 Sobic006G106200 Sobic006G106200 Sobic010G241600--Sobic006G106200 Sobic010G241600--Sobic004G350200 Sobic002G312800 Sobic002G312800 Sobic010G241600--Sobic002G312800 Sobic003G349000 Sobic003G349000 Sobic010G241600--Sobic003G349000 Sobic010G021900 Sobic010G021900 Sobic010G241600--Sobic010G021900 Sobic002G083800 Sobic002G083800 Sobic004G288100--Sobic002G083800 Sobic004G288100--Sobic002G329700 Sobic002G129200 Sobic002G129200 Sobic004G288100--Sobic002G129200 Sobic001G052900 Sobic001G052900 Sobic004G288100--Sobic001G052900 Sobic004G288100--Sobic001G370500 Sobic010G088600 Sobic010G088600 Sobic004G288100--Sobic010G088600 Sobic001G498400 Sobic001G498400 Sobic004G288100--Sobic001G498400 Sobic002G003000 Sobic002G003000 Sobic004G288100--Sobic002G003000 Sobic004G288100--Sobic002G278600 Sobic001G432100 Sobic001G432100 Sobic006G120200--Sobic001G432100 Sobic004G348600 Sobic004G348600 Sobic006G120200--Sobic004G348600 Sobic006G120200--Sobic002G278600 Sobic003G206600 Sobic003G206600 Sobic006G120200--Sobic003G206600 Sobic006G120200--Sobic003G396800 Sobic002G280900 Sobic002G280900 Sobic006G120200--Sobic002G280900 Sobic004G067400 Sobic004G067400 Sobic006G120200--Sobic004G067400 Sobic005G132700 Sobic005G132700 Sobic006G120200--Sobic005G132700 Sobic006G120200--Sobic010G059700 Sobic003G312400 Sobic003G312400 Sobic006G129000--Sobic003G312400 Sobic003G252900 Sobic003G252900 Sobic006G129000--Sobic003G252900 Sobic004G056400 Sobic004G056400 Sobic006G129000--Sobic004G056400 Sobic003G152700 Sobic003G152700 Sobic006G129000--Sobic003G152700 Sobic001G418000 Sobic001G418000 Sobic006G129000--Sobic001G418000 Sobic010G265900 Sobic010G265900 Sobic006G129000--Sobic010G265900 Sobic003G326800 Sobic003G326800 Sobic006G129000--Sobic003G326800 Sobic001G505500 Sobic001G505500 Sobic006G129000--Sobic001G505500 Sobic004G075100 Sobic004G075100 Sobic006G129000--Sobic004G075100
Octagon: transcription factors


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