Gene annotation
Transcriptome id Sobic.010G241600.2,Sobic.010G241600.1,Sobic.010G241600.3
Synonym Sb10g028180
Functional annotation RNASEH2A - Putative ribonuclease H2 large subunit, expressed
UniProt A0A194YL43 , C5Z8P5
Pfam PF01351
Panther DB PTHR10954 PTHR10954:SF7
NCBI CDD KOG2299; Ribonuclease HI
KEGG Orthology K10743; ribonuclease H2 subunit A
Gene Ontology GO:0004523; RNA-DNA hybrid ribonuclease activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT2G25100 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os11g05570.1 : RNASEH2A - Putative ribonuclease H2 large subunit, expressed
MaizeGDB (Corn) Zm00025a053919 , Zm00025a053936
Brachypodium KQJ92197
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G466600 expressed protein -
2 Sobic.010G237800 ZOS1-21 - C2H2 zinc finger protein, expressed -
3 Sobic.003G282700 protein kri1, putative, expressed K14786: protein KRI1
4 Sobic.001G141700 acidic leucine-rich nuclear phosphoprotein 32-related protein 2, putative, expressed K18647: acidic leucine-rich nuclear phosphoprotein 32 family member B
5 Sobic.006G106200 NAP domain containing protein, putative, expressed K11290: SET, TAF1, template-activating factor I
6 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
7 Sobic.002G312800 WD domain, G-beta repeat domain containing protein, expressed K14841: NSA1, ribosome biogenesis protein NSA1
8 Sobic.003G349000 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
9 Sobic.010G021900 rad1, putative, expressed K02830: HRAD1, cell cycle checkpoint protein
10 Sobic.003G320100 pentatricopeptide containing protein, putative, expressed -
11 Sobic.002G329700 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
12 Sobic.002G046300 expressed protein -
13 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
14 Sobic.005G160200 sialyltransferase family domain containing protein, expressed -
15 Sobic.003G289700 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
16 Sobic.002G278600 peptidyl-prolyl cis-trans isomerase, putative, expressed -
17 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
18 Sobic.003G051100 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
19 Sobic.003G041400 aminoacyl-tRNA synthetase, putative, expressed -
20 Sobic.006G250100 tRNA-specific adenosine deaminase 1, putative, expressed K15440: TAD1, tRNA-specific adenosine deaminase 1


Gene co-expression network
sample Sobic010G241600 Sobic010G241600 Sobic001G466600 Sobic001G466600 Sobic010G241600--Sobic001G466600 Sobic010G237800 Sobic010G237800 Sobic010G241600--Sobic010G237800 Sobic003G282700 Sobic003G282700 Sobic010G241600--Sobic003G282700 Sobic001G141700 Sobic001G141700 Sobic010G241600--Sobic001G141700 Sobic006G106200 Sobic006G106200 Sobic010G241600--Sobic006G106200 Sobic004G350200 Sobic004G350200 Sobic010G241600--Sobic004G350200 Sobic002G312800 Sobic002G312800 Sobic010G241600--Sobic002G312800 Sobic003G349000 Sobic003G349000 Sobic010G241600--Sobic003G349000 Sobic010G021900 Sobic010G021900 Sobic010G241600--Sobic010G021900 Sobic001G466600--Sobic002G312800 Sobic001G466600--Sobic010G241600 Sobic006G095400 Sobic006G095400 Sobic001G466600--Sobic006G095400 Sobic001G299800 Sobic001G299800 Sobic001G466600--Sobic001G299800 Sobic002G046300 Sobic002G046300 Sobic001G466600--Sobic002G046300 Sobic002G329700 Sobic002G329700 Sobic001G466600--Sobic002G329700 Sobic001G152360 Sobic001G152360 Sobic001G466600--Sobic001G152360 Sobic003G089200 Sobic003G089200 Sobic001G466600--Sobic003G089200 Sobic009G228900 Sobic009G228900 Sobic001G466600--Sobic009G228900 Sobic003G289700 Sobic003G289700 Sobic010G237800--Sobic003G289700 Sobic008G070700 Sobic008G070700 Sobic010G237800--Sobic008G070700 Sobic001G158300 Sobic001G158300 Sobic010G237800--Sobic001G158300 Sobic010G237800--Sobic006G106200 Sobic003G013800 Sobic003G013800 Sobic010G237800--Sobic003G013800 Sobic002G374200 Sobic002G374200 Sobic010G237800--Sobic002G374200 Sobic010G212700 Sobic010G212700 Sobic010G237800--Sobic010G212700 Sobic007G153700 Sobic007G153700 Sobic010G237800--Sobic007G153700 Sobic002G196500 Sobic002G196500 Sobic010G237800--Sobic002G196500 Sobic007G188200 Sobic007G188200 Sobic003G282700--Sobic007G188200 Sobic003G282700--Sobic003G349000 Sobic003G282700--Sobic010G241600 Sobic007G053700 Sobic007G053700 Sobic003G282700--Sobic007G053700 Sobic004G027700 Sobic004G027700 Sobic003G282700--Sobic004G027700 Sobic003G072500 Sobic003G072500 Sobic003G282700--Sobic003G072500 Sobic002G154400 Sobic002G154400 Sobic003G282700--Sobic002G154400 Sobic001G177400 Sobic001G177400 Sobic003G282700--Sobic001G177400 Sobic003G282700--Sobic010G237800 Sobic002G293400 Sobic002G293400 Sobic001G141700--Sobic002G293400 Sobic001G141700--Sobic003G349000 Sobic001G141700--Sobic010G237800 Sobic001G141700--Sobic010G241600 Sobic002G003000 Sobic002G003000 Sobic001G141700--Sobic002G003000 Sobic001G141700--Sobic001G158300 Sobic008G022200 Sobic008G022200 Sobic001G141700--Sobic008G022200 Sobic001G141700--Sobic003G282700 Sobic001G399600 Sobic001G399600 Sobic001G141700--Sobic001G399600 Sobic001G211500 Sobic001G211500 Sobic006G106200--Sobic001G211500 Sobic006G106200--Sobic008G070700 Sobic010G222800 Sobic010G222800 Sobic006G106200--Sobic010G222800 Sobic006G106200--Sobic003G072500 Sobic006G106200--Sobic003G289700 Sobic004G149400 Sobic004G149400 Sobic006G106200--Sobic004G149400 Sobic001G005800 Sobic001G005800 Sobic006G106200--Sobic001G005800 Sobic009G216500 Sobic009G216500 Sobic006G106200--Sobic009G216500 Sobic002G112000 Sobic002G112000 Sobic006G106200--Sobic002G112000 Sobic010G038900 Sobic010G038900 Sobic004G350200--Sobic010G038900 Sobic004G000400 Sobic004G000400 Sobic004G350200--Sobic004G000400 Sobic005G160200 Sobic005G160200 Sobic004G350200--Sobic005G160200 Sobic007G036800 Sobic007G036800 Sobic004G350200--Sobic007G036800 Sobic004G063300 Sobic004G063300 Sobic004G350200--Sobic004G063300 Sobic001G123600 Sobic001G123600 Sobic004G350200--Sobic001G123600 Sobic009G063800 Sobic009G063800 Sobic004G350200--Sobic009G063800 Sobic006G106600 Sobic006G106600 Sobic004G350200--Sobic006G106600 Sobic001G229300 Sobic001G229300 Sobic004G350200--Sobic001G229300 Sobic002G312800--Sobic001G466600 Sobic002G312800--Sobic006G095400 Sobic002G312800--Sobic003G349000 Sobic002G312800--Sobic001G299800 Sobic002G312800--Sobic002G154400 Sobic002G312800--Sobic010G241600 Sobic009G042100 Sobic009G042100 Sobic002G312800--Sobic009G042100 Sobic002G312800--Sobic003G282700 Sobic002G312800--Sobic007G053700 Sobic003G349000--Sobic002G154400 Sobic003G349000--Sobic002G312800 Sobic003G349000--Sobic001G141700 Sobic003G349000--Sobic003G282700 Sobic003G349000--Sobic007G053700 Sobic003G349000--Sobic010G237800 Sobic003G349000--Sobic009G042100 Sobic003G349000--Sobic010G241600 Sobic002G056000 Sobic002G056000 Sobic003G349000--Sobic002G056000 Sobic002G303800 Sobic002G303800 Sobic010G021900--Sobic002G303800 Sobic004G208100 Sobic004G208100 Sobic010G021900--Sobic004G208100 Sobic003G183700 Sobic003G183700 Sobic010G021900--Sobic003G183700 Sobic002G021200 Sobic002G021200 Sobic010G021900--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic010G021900--Sobic006G281900 Sobic001G122100 Sobic001G122100 Sobic010G021900--Sobic001G122100 Sobic003G444300 Sobic003G444300 Sobic010G021900--Sobic003G444300 Sobic002G133000 Sobic002G133000 Sobic010G021900--Sobic002G133000 Sobic006G051000 Sobic006G051000 Sobic010G021900--Sobic006G051000
Octagon: transcription factors


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