Gene annotation
Transcriptome id Sobic.002G312800.1
Synonym Sb02g034230
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5X9C7
Pfam -
Panther DB PTHR16038 PTHR16038:SF4
NCBI CDD KOG3881; Uncharacterized conserved protein
KEGG Orthology K14841; NSA1, ribosome biogenesis protein NSA1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G29320 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os07g32350.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a014745 , Zm00025a048170 , Zm00025a006494
Brachypodium KQK16091 , PNT75035
Barley HORVU2Hr1G048110.2 , HORVU2Hr1G048110.3 , HORVU2Hr1G048110.10 , HORVU2Hr1G048110.1 , HORVU2Hr1G048110.6 , HORVU2Hr1G048110.7 , HORVU2Hr1G048110.4 , HORVU2Hr1G048110.8 , HORVU2Hr1G048110.9
Wheat TraesCS2B02G250300 , TraesCS2A02G233000 , TraesCS2A02G233000 , TraesCS2D02G232500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G466600 expressed protein -
2 Sobic.006G095400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K14826: FK506-binding nuclear protein
3 Sobic.003G349000 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
4 Sobic.001G299800 inducer of CBF expression 2, putative, expressed -
5 Sobic.002G154400 MIM, putative, expressed -
6 Sobic.010G241600 RNASEH2A - Putative ribonuclease H2 large subunit, expressed K10743: ribonuclease H2 subunit A
7 Sobic.009G042100 MA3 domain containing protein, expressed K17583: nucleolar MIF4G domain-containing protein 1
8 Sobic.003G282700 protein kri1, putative, expressed K14786: protein KRI1
9 Sobic.007G053700 MYB family transcription factor, putative, expressed -
10 Sobic.001G206500 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
11 Sobic.004G027700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
12 Sobic.006G143200 - K14805: DDX24, ATP-dependent RNA helicase DDX24/MAK5
13 Sobic.002G046300 expressed protein -
14 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
15 Sobic.003G089200 expressed protein -
16 Sobic.001G458000 expressed protein -
17 Sobic.001G141700 acidic leucine-rich nuclear phosphoprotein 32-related protein 2, putative, expressed K18647: acidic leucine-rich nuclear phosphoprotein 32 family member B
18 Sobic.002G278600 peptidyl-prolyl cis-trans isomerase, putative, expressed -
19 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
20 Sobic.002G329700 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28


Gene co-expression network
sample Sobic002G312800 Sobic002G312800 Sobic001G466600 Sobic001G466600 Sobic002G312800--Sobic001G466600 Sobic006G095400 Sobic006G095400 Sobic002G312800--Sobic006G095400 Sobic003G349000 Sobic003G349000 Sobic002G312800--Sobic003G349000 Sobic001G299800 Sobic001G299800 Sobic002G312800--Sobic001G299800 Sobic002G154400 Sobic002G154400 Sobic002G312800--Sobic002G154400 Sobic010G241600 Sobic010G241600 Sobic002G312800--Sobic010G241600 Sobic009G042100 Sobic009G042100 Sobic002G312800--Sobic009G042100 Sobic003G282700 Sobic003G282700 Sobic002G312800--Sobic003G282700 Sobic007G053700 Sobic007G053700 Sobic002G312800--Sobic007G053700 Sobic001G466600--Sobic002G312800 Sobic001G466600--Sobic010G241600 Sobic001G466600--Sobic006G095400 Sobic001G466600--Sobic001G299800 Sobic002G046300 Sobic002G046300 Sobic001G466600--Sobic002G046300 Sobic002G329700 Sobic002G329700 Sobic001G466600--Sobic002G329700 Sobic001G152360 Sobic001G152360 Sobic001G466600--Sobic001G152360 Sobic003G089200 Sobic003G089200 Sobic001G466600--Sobic003G089200 Sobic009G228900 Sobic009G228900 Sobic001G466600--Sobic009G228900 Sobic001G173800 Sobic001G173800 Sobic006G095400--Sobic001G173800 Sobic009G228500 Sobic009G228500 Sobic006G095400--Sobic009G228500 Sobic006G095400--Sobic002G312800 Sobic002G300500 Sobic002G300500 Sobic006G095400--Sobic002G300500 Sobic006G143200 Sobic006G143200 Sobic006G095400--Sobic006G143200 Sobic009G235200 Sobic009G235200 Sobic006G095400--Sobic009G235200 Sobic001G206500 Sobic001G206500 Sobic006G095400--Sobic001G206500 Sobic008G163500 Sobic008G163500 Sobic006G095400--Sobic008G163500 Sobic006G095400--Sobic001G466600 Sobic003G349000--Sobic002G154400 Sobic003G349000--Sobic002G312800 Sobic001G141700 Sobic001G141700 Sobic003G349000--Sobic001G141700 Sobic003G349000--Sobic003G282700 Sobic003G349000--Sobic007G053700 Sobic010G237800 Sobic010G237800 Sobic003G349000--Sobic010G237800 Sobic003G349000--Sobic009G042100 Sobic003G349000--Sobic010G241600 Sobic002G056000 Sobic002G056000 Sobic003G349000--Sobic002G056000 Sobic001G299800--Sobic002G312800 Sobic001G299800--Sobic001G466600 Sobic001G299800--Sobic003G089200 Sobic004G020150 Sobic004G020150 Sobic001G299800--Sobic004G020150 Sobic001G299800--Sobic003G349000 Sobic009G088575 Sobic009G088575 Sobic001G299800--Sobic009G088575 Sobic010G087000 Sobic010G087000 Sobic001G299800--Sobic010G087000 Sobic009G239400 Sobic009G239400 Sobic001G299800--Sobic009G239400 Sobic008G140500 Sobic008G140500 Sobic001G299800--Sobic008G140500 Sobic002G154400--Sobic009G042100 Sobic007G039300 Sobic007G039300 Sobic002G154400--Sobic007G039300 Sobic002G154400--Sobic007G053700 Sobic002G154400--Sobic003G349000 Sobic010G240800 Sobic010G240800 Sobic002G154400--Sobic010G240800 Sobic004G020900 Sobic004G020900 Sobic002G154400--Sobic004G020900 Sobic009G032200 Sobic009G032200 Sobic002G154400--Sobic009G032200 Sobic008G017900 Sobic008G017900 Sobic002G154400--Sobic008G017900 Sobic009G069200 Sobic009G069200 Sobic002G154400--Sobic009G069200 Sobic010G241600--Sobic001G466600 Sobic010G241600--Sobic010G237800 Sobic010G241600--Sobic003G282700 Sobic010G241600--Sobic001G141700 Sobic006G106200 Sobic006G106200 Sobic010G241600--Sobic006G106200 Sobic004G350200 Sobic004G350200 Sobic010G241600--Sobic004G350200 Sobic010G241600--Sobic002G312800 Sobic010G241600--Sobic003G349000 Sobic010G021900 Sobic010G021900 Sobic010G241600--Sobic010G021900 Sobic009G042100--Sobic001G206500 Sobic009G042100--Sobic002G154400 Sobic003G206600 Sobic003G206600 Sobic009G042100--Sobic003G206600 Sobic009G042100--Sobic009G069200 Sobic009G042100--Sobic008G017900 Sobic009G043400 Sobic009G043400 Sobic009G042100--Sobic009G043400 Sobic009G042100--Sobic003G349000 Sobic009G042100--Sobic002G312800 Sobic009G042100--Sobic010G240800 Sobic007G188200 Sobic007G188200 Sobic003G282700--Sobic007G188200 Sobic003G282700--Sobic003G349000 Sobic003G282700--Sobic010G241600 Sobic003G282700--Sobic007G053700 Sobic004G027700 Sobic004G027700 Sobic003G282700--Sobic004G027700 Sobic003G072500 Sobic003G072500 Sobic003G282700--Sobic003G072500 Sobic003G282700--Sobic002G154400 Sobic001G177400 Sobic001G177400 Sobic003G282700--Sobic001G177400 Sobic003G282700--Sobic010G237800 Sobic007G053700--Sobic002G154400 Sobic007G053700--Sobic003G349000 Sobic009G190200 Sobic009G190200 Sobic007G053700--Sobic009G190200 Sobic007G053700--Sobic003G282700 Sobic007G053700--Sobic009G235200 Sobic005G114101 Sobic005G114101 Sobic007G053700--Sobic005G114101 Sobic002G009800 Sobic002G009800 Sobic007G053700--Sobic002G009800 Sobic007G053700--Sobic002G312800 Sobic002G053200 Sobic002G053200 Sobic007G053700--Sobic002G053200
Octagon: transcription factors


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