Gene annotation
Transcriptome id Sobic.006G095400.1
Synonym FKBP53, Sb06g018020, ATFKBP53
Functional annotation peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
UniProt C5Y997
Pfam PF00254
Panther DB PTHR10516 PTHR10516:SF292
NCBI CDD KOG0544; FKBP-type peptidyl-prolyl cis-trans isomerase
KEGG Orthology K14826; FK506-binding nuclear protein
Gene Ontology GO:0006457; protein folding


Orthologs (automatic annotation)
TAIR AT4G25340 : FK506 BINDING PROTEIN 53
RAP-DB (Rice) LOC_Os04g36890.1 : peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
MaizeGDB (Corn) Zm00025a056146
Brachypodium -
Barley HORVU2Hr1G078350.7 , HORVU2Hr1G078350.6 , HORVU2Hr1G078350.5 , HORVU2Hr1G078350.4 , HORVU2Hr1G078350.3 , HORVU2Hr1G078350.1
Wheat TraesCS2B02G333300 , TraesCS2B02G333300 , TraesCS2D02G313000
Populus PNT10856 , PNT10857 , PNT01912 , PNT01911 , PNT01910


JBrowse

Open New Page


cDNA sequences
Sobic.006G095400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
2 Sobic.009G228500 60S ribosomal protein-related, putative, expressed K14775: UTP30, ribosome biogenesis protein UTP30
3 Sobic.002G312800 WD domain, G-beta repeat domain containing protein, expressed K14841: NSA1, ribosome biogenesis protein NSA1
4 Sobic.002G300500 DNA-directed RNA polymerase III subunit RPC8, putative, expressed K03022: RPC8, DNA-directed RNA polymerase III subunit RPC8
5 Sobic.006G143200 - K14805: DDX24, ATP-dependent RNA helicase DDX24/MAK5
6 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
7 Sobic.001G206500 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
8 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
9 Sobic.001G466600 expressed protein -
10 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
11 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
12 Sobic.001G358600 LTV1, putative, expressed K14798: protein LTV1
13 Sobic.007G069700 gar2, putative, expressed K11294: NCL, nucleolin
14 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
15 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
16 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
17 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
18 Sobic.001G382500 AARP2CN domain containing protein, expressed K14569: ribosome biogenesis protein BMS1
19 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
20 Sobic.009G173600 expressed protein K14572: MDN1, midasin


Gene co-expression network
sample Sobic006G095400 Sobic006G095400 Sobic001G173800 Sobic001G173800 Sobic006G095400--Sobic001G173800 Sobic009G228500 Sobic009G228500 Sobic006G095400--Sobic009G228500 Sobic002G312800 Sobic002G312800 Sobic006G095400--Sobic002G312800 Sobic002G300500 Sobic002G300500 Sobic006G095400--Sobic002G300500 Sobic006G143200 Sobic006G143200 Sobic006G095400--Sobic006G143200 Sobic009G235200 Sobic009G235200 Sobic006G095400--Sobic009G235200 Sobic001G206500 Sobic001G206500 Sobic006G095400--Sobic001G206500 Sobic008G163500 Sobic008G163500 Sobic006G095400--Sobic008G163500 Sobic001G466600 Sobic001G466600 Sobic006G095400--Sobic001G466600 Sobic001G382500 Sobic001G382500 Sobic001G173800--Sobic001G382500 Sobic001G501400 Sobic001G501400 Sobic001G173800--Sobic001G501400 Sobic001G173800--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G173800--Sobic008G049100 Sobic009G173600 Sobic009G173600 Sobic001G173800--Sobic009G173600 Sobic001G173800--Sobic009G235200 Sobic003G156500 Sobic003G156500 Sobic001G173800--Sobic003G156500 Sobic009G246500 Sobic009G246500 Sobic001G173800--Sobic009G246500 Sobic005G000300 Sobic005G000300 Sobic001G173800--Sobic005G000300 Sobic007G137350 Sobic007G137350 Sobic009G228500--Sobic007G137350 Sobic009G228500--Sobic006G095400 Sobic006G135000 Sobic006G135000 Sobic009G228500--Sobic006G135000 Sobic007G108100 Sobic007G108100 Sobic009G228500--Sobic007G108100 Sobic001G493400 Sobic001G493400 Sobic009G228500--Sobic001G493400 Sobic004G173100 Sobic004G173100 Sobic009G228500--Sobic004G173100 Sobic004G190600 Sobic004G190600 Sobic009G228500--Sobic004G190600 Sobic010G038800 Sobic010G038800 Sobic009G228500--Sobic010G038800 Sobic004G002500 Sobic004G002500 Sobic009G228500--Sobic004G002500 Sobic002G312800--Sobic001G466600 Sobic002G312800--Sobic006G095400 Sobic003G349000 Sobic003G349000 Sobic002G312800--Sobic003G349000 Sobic001G299800 Sobic001G299800 Sobic002G312800--Sobic001G299800 Sobic002G154400 Sobic002G154400 Sobic002G312800--Sobic002G154400 Sobic010G241600 Sobic010G241600 Sobic002G312800--Sobic010G241600 Sobic009G042100 Sobic009G042100 Sobic002G312800--Sobic009G042100 Sobic003G282700 Sobic003G282700 Sobic002G312800--Sobic003G282700 Sobic007G053700 Sobic007G053700 Sobic002G312800--Sobic007G053700 Sobic009G163600 Sobic009G163600 Sobic002G300500--Sobic009G163600 Sobic002G300500--Sobic006G095400 Sobic005G028100 Sobic005G028100 Sobic002G300500--Sobic005G028100 Sobic005G088900 Sobic005G088900 Sobic002G300500--Sobic005G088900 Sobic003G432300 Sobic003G432300 Sobic002G300500--Sobic003G432300 Sobic006G059500 Sobic006G059500 Sobic002G300500--Sobic006G059500 Sobic002G300500--Sobic008G163500 Sobic009G176300 Sobic009G176300 Sobic002G300500--Sobic009G176300 Sobic002G399200 Sobic002G399200 Sobic002G300500--Sobic002G399200 Sobic004G030600 Sobic004G030600 Sobic006G143200--Sobic004G030600 Sobic006G143200--Sobic001G173800 Sobic006G143200--Sobic003G432300 Sobic006G143200--Sobic006G095400 Sobic001G203500 Sobic001G203500 Sobic006G143200--Sobic001G203500 Sobic006G143200--Sobic010G038800 Sobic006G143200--Sobic001G206500 Sobic006G143200--Sobic009G173600 Sobic006G181800 Sobic006G181800 Sobic006G143200--Sobic006G181800 Sobic009G235200--Sobic008G163500 Sobic006G226300 Sobic006G226300 Sobic009G235200--Sobic006G226300 Sobic002G142600 Sobic002G142600 Sobic009G235200--Sobic002G142600 Sobic003G042400 Sobic003G042400 Sobic009G235200--Sobic003G042400 Sobic007G014800 Sobic007G014800 Sobic009G235200--Sobic007G014800 Sobic009G235200--Sobic002G399200 Sobic009G235200--Sobic001G173800 Sobic005G199200 Sobic005G199200 Sobic009G235200--Sobic005G199200 Sobic002G263700 Sobic002G263700 Sobic009G235200--Sobic002G263700 Sobic001G206500--Sobic009G042100 Sobic001G455800 Sobic001G455800 Sobic001G206500--Sobic001G455800 Sobic003G004300 Sobic003G004300 Sobic001G206500--Sobic003G004300 Sobic001G098400 Sobic001G098400 Sobic001G206500--Sobic001G098400 Sobic003G222000 Sobic003G222000 Sobic001G206500--Sobic003G222000 Sobic010G081700 Sobic010G081700 Sobic001G206500--Sobic010G081700 Sobic004G031300 Sobic004G031300 Sobic001G206500--Sobic004G031300 Sobic002G428100 Sobic002G428100 Sobic001G206500--Sobic002G428100 Sobic001G004100 Sobic001G004100 Sobic001G206500--Sobic001G004100 Sobic008G163500--Sobic005G028100 Sobic003G123200 Sobic003G123200 Sobic008G163500--Sobic003G123200 Sobic008G163500--Sobic009G246500 Sobic010G205900 Sobic010G205900 Sobic008G163500--Sobic010G205900 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic001G422500 Sobic001G422500 Sobic008G163500--Sobic001G422500 Sobic010G224700 Sobic010G224700 Sobic008G163500--Sobic010G224700 Sobic004G036700 Sobic004G036700 Sobic008G163500--Sobic004G036700 Sobic001G466600--Sobic002G312800 Sobic001G466600--Sobic010G241600 Sobic001G466600--Sobic006G095400 Sobic001G466600--Sobic001G299800 Sobic002G046300 Sobic002G046300 Sobic001G466600--Sobic002G046300 Sobic002G329700 Sobic002G329700 Sobic001G466600--Sobic002G329700 Sobic001G152360 Sobic001G152360 Sobic001G466600--Sobic001G152360 Sobic003G089200 Sobic003G089200 Sobic001G466600--Sobic003G089200 Sobic009G228900 Sobic009G228900 Sobic001G466600--Sobic009G228900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.