Gene annotation
Transcriptome id Sobic.002G300500.1
Synonym Sb02g033110
Functional annotation DNA-directed RNA polymerase III subunit RPC8, putative, expressed
UniProt C5X8I0
Pfam PF03876 PF08292
Panther DB PTHR12709 PTHR12709:SF1
NCBI CDD KOG3297; DNA-directed RNA polymerase subunit E'
KEGG Orthology K03022; RPC8, DNA-directed RNA polymerase III subunit RPC8
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT1G06790 : RNA polymerase Rpb7 N-terminal domain-containing protein
RAP-DB (Rice) LOC_Os07g29420.3 : DNA-directed RNA polymerase III subunit RPC8, putative, expressed
MaizeGDB (Corn) Zm00025a047831
Brachypodium KQJ85262
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G300500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
2 Sobic.006G095400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K14826: FK506-binding nuclear protein
3 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
4 Sobic.005G088900 AGAP007117-PA, putative, expressed -
5 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
6 Sobic.006G059500 expressed protein K13150: COIL, coilin
7 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
8 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
9 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
10 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
11 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
12 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -
13 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
14 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
15 Sobic.008G018800 EMB1379, putative, expressed -
16 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
17 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
18 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
19 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
20 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58


Gene co-expression network
sample Sobic002G300500 Sobic002G300500 Sobic009G163600 Sobic009G163600 Sobic002G300500--Sobic009G163600 Sobic006G095400 Sobic006G095400 Sobic002G300500--Sobic006G095400 Sobic005G028100 Sobic005G028100 Sobic002G300500--Sobic005G028100 Sobic005G088900 Sobic005G088900 Sobic002G300500--Sobic005G088900 Sobic003G432300 Sobic003G432300 Sobic002G300500--Sobic003G432300 Sobic006G059500 Sobic006G059500 Sobic002G300500--Sobic006G059500 Sobic008G163500 Sobic008G163500 Sobic002G300500--Sobic008G163500 Sobic009G176300 Sobic009G176300 Sobic002G300500--Sobic009G176300 Sobic002G399200 Sobic002G399200 Sobic002G300500--Sobic002G399200 Sobic003G425100 Sobic003G425100 Sobic009G163600--Sobic003G425100 Sobic003G436600 Sobic003G436600 Sobic009G163600--Sobic003G436600 Sobic002G112600 Sobic002G112600 Sobic009G163600--Sobic002G112600 Sobic010G224700 Sobic010G224700 Sobic009G163600--Sobic010G224700 Sobic001G322600 Sobic001G322600 Sobic009G163600--Sobic001G322600 Sobic009G163600--Sobic008G163500 Sobic004G038100 Sobic004G038100 Sobic009G163600--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic009G163600--Sobic007G059700 Sobic006G140400 Sobic006G140400 Sobic009G163600--Sobic006G140400 Sobic001G173800 Sobic001G173800 Sobic006G095400--Sobic001G173800 Sobic009G228500 Sobic009G228500 Sobic006G095400--Sobic009G228500 Sobic002G312800 Sobic002G312800 Sobic006G095400--Sobic002G312800 Sobic006G095400--Sobic002G300500 Sobic006G143200 Sobic006G143200 Sobic006G095400--Sobic006G143200 Sobic009G235200 Sobic009G235200 Sobic006G095400--Sobic009G235200 Sobic001G206500 Sobic001G206500 Sobic006G095400--Sobic001G206500 Sobic006G095400--Sobic008G163500 Sobic001G466600 Sobic001G466600 Sobic006G095400--Sobic001G466600 Sobic004G036700 Sobic004G036700 Sobic005G028100--Sobic004G036700 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic010G205900 Sobic010G205900 Sobic005G028100--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic005G028100--Sobic003G123200 Sobic005G028100--Sobic003G432300 Sobic002G126800 Sobic002G126800 Sobic005G028100--Sobic002G126800 Sobic001G373000 Sobic001G373000 Sobic005G028100--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic005G028100--Sobic002G132600 Sobic001G199500 Sobic001G199500 Sobic005G088900--Sobic001G199500 Sobic009G191500 Sobic009G191500 Sobic005G088900--Sobic009G191500 Sobic005G088900--Sobic009G176300 Sobic004G215900 Sobic004G215900 Sobic005G088900--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic005G088900--Sobic008G068100 Sobic005G088900--Sobic003G432300 Sobic003G144000 Sobic003G144000 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300 Sobic003G432300--Sobic002G126800 Sobic003G432300--Sobic005G028100 Sobic003G432300--Sobic005G088900 Sobic003G432300--Sobic002G132600 Sobic003G432300--Sobic001G373000 Sobic003G432300--Sobic003G144000 Sobic008G000600 Sobic008G000600 Sobic003G432300--Sobic008G000600 Sobic002G043000 Sobic002G043000 Sobic003G432300--Sobic002G043000 Sobic003G432300--Sobic004G038100 Sobic004G151000 Sobic004G151000 Sobic006G059500--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic006G059500--Sobic001G049800 Sobic006G059500--Sobic002G132600 Sobic006G111200 Sobic006G111200 Sobic006G059500--Sobic006G111200 Sobic006G059500--Sobic004G215900 Sobic007G060600 Sobic007G060600 Sobic006G059500--Sobic007G060600 Sobic006G059500--Sobic006G140400 Sobic001G453500 Sobic001G453500 Sobic006G059500--Sobic001G453500 Sobic009G142000 Sobic009G142000 Sobic006G059500--Sobic009G142000 Sobic008G163500--Sobic005G028100 Sobic008G163500--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic008G163500--Sobic009G246500 Sobic008G163500--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic001G422500 Sobic001G422500 Sobic008G163500--Sobic001G422500 Sobic008G163500--Sobic010G224700 Sobic008G163500--Sobic004G036700 Sobic009G176300--Sobic005G088900 Sobic009G176300--Sobic008G068100 Sobic009G176300--Sobic009G191500 Sobic009G176300--Sobic003G432300 Sobic003G336500 Sobic003G336500 Sobic009G176300--Sobic003G336500 Sobic003G235700 Sobic003G235700 Sobic009G176300--Sobic003G235700 Sobic009G176300--Sobic005G028100 Sobic009G176300--Sobic001G199500 Sobic004G027400 Sobic004G027400 Sobic009G176300--Sobic004G027400 Sobic002G262100 Sobic002G262100 Sobic002G399200--Sobic002G262100 Sobic002G399200--Sobic008G163500 Sobic002G399200--Sobic009G235200 Sobic004G173100 Sobic004G173100 Sobic002G399200--Sobic004G173100 Sobic002G399200--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic002G399200--Sobic002G177500 Sobic006G226300 Sobic006G226300 Sobic002G399200--Sobic006G226300 Sobic002G399200--Sobic009G163600 Sobic009G040500 Sobic009G040500 Sobic002G399200--Sobic009G040500
Octagon: transcription factors


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