Gene annotation
Transcriptome id Sobic.006G143200.1
Synonym Sb06g022240
Functional annotation -
UniProt A0A1Z5REK9
Pfam PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF91
NCBI CDD KOG0347; RNA helicase
KEGG Orthology K14805; DDX24, ATP-dependent RNA helicase DDX24/MAK5
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G16840 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os04g43140.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a010669
Brachypodium KQJ83516
Barley HORVU2Hr1G088480.4 , HORVU2Hr1G088480.5 , HORVU2Hr1G088480.6 , HORVU2Hr1G088480.1 , HORVU2Hr1G088480.2 , HORVU2Hr1G088480.3
Wheat TraesCS2D02G363700 , TraesCS2B02G384300 , TraesCS2A02G366700 , TraesCS2A02G366700
Populus -


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cDNA sequences
Sobic.006G143200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G030600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
3 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
4 Sobic.006G095400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K14826: FK506-binding nuclear protein
5 Sobic.001G203500 pentatricopeptide, putative, expressed -
6 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
7 Sobic.001G206500 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
8 Sobic.009G173600 expressed protein K14572: MDN1, midasin
9 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
10 Sobic.010G081700 PPR repeat domain containing protein, putative, expressed -
11 Sobic.006G059500 expressed protein K13150: COIL, coilin
12 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
13 Sobic.010G091500 pentatricopeptide, putative, expressed -
14 Sobic.003G144000 pentatricopeptide, putative, expressed -
15 Sobic.010G153300 protein phosphatase 2C, putative, expressed K17679: ATP-dependent RNA helicase MSS116, mitochondrial
16 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
17 Sobic.002G112600 zinc finger family protein, putative, expressed -
18 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
19 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
20 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22


Gene co-expression network
sample Sobic006G143200 Sobic006G143200 Sobic004G030600 Sobic004G030600 Sobic006G143200--Sobic004G030600 Sobic001G173800 Sobic001G173800 Sobic006G143200--Sobic001G173800 Sobic003G432300 Sobic003G432300 Sobic006G143200--Sobic003G432300 Sobic006G095400 Sobic006G095400 Sobic006G143200--Sobic006G095400 Sobic001G203500 Sobic001G203500 Sobic006G143200--Sobic001G203500 Sobic010G038800 Sobic010G038800 Sobic006G143200--Sobic010G038800 Sobic001G206500 Sobic001G206500 Sobic006G143200--Sobic001G206500 Sobic009G173600 Sobic009G173600 Sobic006G143200--Sobic009G173600 Sobic006G181800 Sobic006G181800 Sobic006G143200--Sobic006G181800 Sobic001G033600 Sobic001G033600 Sobic004G030600--Sobic001G033600 Sobic008G031200 Sobic008G031200 Sobic004G030600--Sobic008G031200 Sobic004G030600--Sobic006G143200 Sobic002G362200 Sobic002G362200 Sobic004G030600--Sobic002G362200 Sobic004G027700 Sobic004G027700 Sobic004G030600--Sobic004G027700 Sobic002G084400 Sobic002G084400 Sobic004G030600--Sobic002G084400 Sobic006G085800 Sobic006G085800 Sobic004G030600--Sobic006G085800 Sobic010G068900 Sobic010G068900 Sobic004G030600--Sobic010G068900 Sobic003G067201 Sobic003G067201 Sobic004G030600--Sobic003G067201 Sobic001G382500 Sobic001G382500 Sobic001G173800--Sobic001G382500 Sobic001G501400 Sobic001G501400 Sobic001G173800--Sobic001G501400 Sobic008G163500 Sobic008G163500 Sobic001G173800--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G173800--Sobic008G049100 Sobic001G173800--Sobic009G173600 Sobic009G235200 Sobic009G235200 Sobic001G173800--Sobic009G235200 Sobic003G156500 Sobic003G156500 Sobic001G173800--Sobic003G156500 Sobic009G246500 Sobic009G246500 Sobic001G173800--Sobic009G246500 Sobic005G000300 Sobic005G000300 Sobic001G173800--Sobic005G000300 Sobic002G126800 Sobic002G126800 Sobic003G432300--Sobic002G126800 Sobic005G028100 Sobic005G028100 Sobic003G432300--Sobic005G028100 Sobic005G088900 Sobic005G088900 Sobic003G432300--Sobic005G088900 Sobic002G132600 Sobic002G132600 Sobic003G432300--Sobic002G132600 Sobic001G373000 Sobic001G373000 Sobic003G432300--Sobic001G373000 Sobic003G144000 Sobic003G144000 Sobic003G432300--Sobic003G144000 Sobic008G000600 Sobic008G000600 Sobic003G432300--Sobic008G000600 Sobic002G043000 Sobic002G043000 Sobic003G432300--Sobic002G043000 Sobic004G038100 Sobic004G038100 Sobic003G432300--Sobic004G038100 Sobic006G095400--Sobic001G173800 Sobic009G228500 Sobic009G228500 Sobic006G095400--Sobic009G228500 Sobic002G312800 Sobic002G312800 Sobic006G095400--Sobic002G312800 Sobic002G300500 Sobic002G300500 Sobic006G095400--Sobic002G300500 Sobic006G095400--Sobic006G143200 Sobic006G095400--Sobic009G235200 Sobic006G095400--Sobic001G206500 Sobic006G095400--Sobic008G163500 Sobic001G466600 Sobic001G466600 Sobic006G095400--Sobic001G466600 Sobic003G431600 Sobic003G431600 Sobic001G203500--Sobic003G431600 Sobic004G157500 Sobic004G157500 Sobic001G203500--Sobic004G157500 Sobic004G064600 Sobic004G064600 Sobic001G203500--Sobic004G064600 Sobic004G354100 Sobic004G354100 Sobic001G203500--Sobic004G354100 Sobic006G265600 Sobic006G265600 Sobic001G203500--Sobic006G265600 Sobic002G426100 Sobic002G426100 Sobic001G203500--Sobic002G426100 Sobic009G260700 Sobic009G260700 Sobic001G203500--Sobic009G260700 Sobic001G191900 Sobic001G191900 Sobic001G203500--Sobic001G191900 Sobic003G135500 Sobic003G135500 Sobic001G203500--Sobic003G135500 Sobic004G215900 Sobic004G215900 Sobic010G038800--Sobic004G215900 Sobic010G038800--Sobic003G144000 Sobic009G191500 Sobic009G191500 Sobic010G038800--Sobic009G191500 Sobic010G153300 Sobic010G153300 Sobic010G038800--Sobic010G153300 Sobic001G408300 Sobic001G408300 Sobic010G038800--Sobic001G408300 Sobic001G372800 Sobic001G372800 Sobic010G038800--Sobic001G372800 Sobic003G322200 Sobic003G322200 Sobic010G038800--Sobic003G322200 Sobic003G123200 Sobic003G123200 Sobic010G038800--Sobic003G123200 Sobic008G068100 Sobic008G068100 Sobic010G038800--Sobic008G068100 Sobic009G042100 Sobic009G042100 Sobic001G206500--Sobic009G042100 Sobic001G455800 Sobic001G455800 Sobic001G206500--Sobic001G455800 Sobic003G004300 Sobic003G004300 Sobic001G206500--Sobic003G004300 Sobic001G098400 Sobic001G098400 Sobic001G206500--Sobic001G098400 Sobic003G222000 Sobic003G222000 Sobic001G206500--Sobic003G222000 Sobic010G081700 Sobic010G081700 Sobic001G206500--Sobic010G081700 Sobic004G031300 Sobic004G031300 Sobic001G206500--Sobic004G031300 Sobic002G428100 Sobic002G428100 Sobic001G206500--Sobic002G428100 Sobic001G004100 Sobic001G004100 Sobic001G206500--Sobic001G004100 Sobic002G071400 Sobic002G071400 Sobic009G173600--Sobic002G071400 Sobic009G173600--Sobic008G049100 Sobic009G173600--Sobic001G173800 Sobic009G173600--Sobic001G382500 Sobic010G205900 Sobic010G205900 Sobic009G173600--Sobic010G205900 Sobic001G544300 Sobic001G544300 Sobic009G173600--Sobic001G544300 Sobic009G173600--Sobic003G123200 Sobic003G199300 Sobic003G199300 Sobic009G173600--Sobic003G199300 Sobic009G173600--Sobic009G246500 Sobic008G111600 Sobic008G111600 Sobic006G181800--Sobic008G111600 Sobic006G181800--Sobic004G038100 Sobic006G181800--Sobic002G426100 Sobic006G033101 Sobic006G033101 Sobic006G181800--Sobic006G033101 Sobic002G371600 Sobic002G371600 Sobic006G181800--Sobic002G371600 Sobic006G181800--Sobic002G043000 Sobic008G092800 Sobic008G092800 Sobic006G181800--Sobic008G092800 Sobic006G236000 Sobic006G236000 Sobic006G181800--Sobic006G236000 Sobic010G188000 Sobic010G188000 Sobic006G181800--Sobic010G188000
Octagon: transcription factors


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