Gene annotation
Transcriptome id Sobic.008G049100.1
Synonym Sb08g004180
Functional annotation nucleolar protein family 6, putative, expressed
UniProt C5YSB3
Pfam PF03813
Panther DB PTHR17972
NCBI CDD -
KEGG Orthology K14544; UTP22, U3 small nucleolar RNA-associated protein 22
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G63810 : -
RAP-DB (Rice) LOC_Os12g06910.1 : nucleolar protein family 6, putative, expressed
MaizeGDB (Corn) Zm00025a025770
Brachypodium PNT65397 , PNT65398 , KQJ92112 , KQJ92111
Barley HORVU5Hr1G035820.5 , HORVU5Hr1G035820.4 , HORVU5Hr1G035820.7 , HORVU5Hr1G035820.6 , HORVU5Hr1G035820.1 , HORVU5Hr1G035820.3 , HORVU5Hr1G035820.2 , HORVU5Hr1G035820.9 , HORVU5Hr1G035820.8 , HORVU5Hr1G035820.11 , HORVU5Hr1G035820.10 , HORVU5Hr1G035820.13 , HORVU5Hr1G035820.12 , HORVU5Hr1G035820.15 , HORVU5Hr1G035820.14 , HORVU5Hr1G035820.17 , HORVU5Hr1G035820.16 , HORVU5Hr1G035820.19 , HORVU5Hr1G035820.18 , HORVU5Hr1G045240.1
Wheat TraesCS5D02G130600 , TraesCS5D02G130600 , TraesCS5D02G130600 , TraesCS5D02G130600 , TraesCS5B02G122300 , TraesCS5B02G122300 , TraesCS5B02G122300 , TraesCS5B02G122300 , TraesCS5A02G122200 , TraesCS5A02G122200 , TraesCS5A02G122200 , TraesCS5A02G122200 , TraesCS5A02G122200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
2 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
3 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
4 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
5 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
6 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
7 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
8 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
9 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
10 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
11 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
12 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
13 Sobic.002G423400 PPR repeat containing protein, expressed -
14 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
15 Sobic.006G128400 PPR repeat containing protein, expressed -
16 Sobic.006G221600 expressed protein K14861: nucleolar pre-ribosomal-associated protein 1
17 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
18 Sobic.010G224700 - K17680: twinkle protein
19 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
20 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6


Gene co-expression network
sample Sobic008G049100 Sobic008G049100 Sobic010G205900 Sobic010G205900 Sobic008G049100--Sobic010G205900 Sobic002G071400 Sobic002G071400 Sobic008G049100--Sobic002G071400 Sobic009G246500 Sobic009G246500 Sobic008G049100--Sobic009G246500 Sobic003G199300 Sobic003G199300 Sobic008G049100--Sobic003G199300 Sobic003G123200 Sobic003G123200 Sobic008G049100--Sobic003G123200 Sobic005G098800 Sobic005G098800 Sobic008G049100--Sobic005G098800 Sobic002G234300 Sobic002G234300 Sobic008G049100--Sobic002G234300 Sobic008G163500 Sobic008G163500 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic005G028100 Sobic005G028100 Sobic010G205900--Sobic005G028100 Sobic010G205900--Sobic002G071400 Sobic010G205900--Sobic005G098800 Sobic010G205900--Sobic008G163500 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic002G071400--Sobic008G049100 Sobic002G071400--Sobic003G199300 Sobic002G071400--Sobic002G234300 Sobic002G071400--Sobic010G205900 Sobic002G071400--Sobic009G246500 Sobic006G221600 Sobic006G221600 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic002G071400--Sobic003G123200 Sobic004G085000 Sobic004G085000 Sobic002G071400--Sobic004G085000 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G101200 Sobic009G101200 Sobic009G246500--Sobic009G101200 Sobic003G199300--Sobic002G071400 Sobic003G199300--Sobic008G049100 Sobic003G199300--Sobic004G085000 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic002G378100 Sobic002G378100 Sobic003G199300--Sobic002G378100 Sobic003G199300--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic003G199300--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic003G199300--Sobic006G185200 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic005G098800--Sobic003G123200 Sobic005G098800--Sobic008G049100 Sobic005G098800--Sobic010G205900 Sobic005G098800--Sobic009G246500 Sobic005G098800--Sobic008G163500 Sobic005G098800--Sobic002G423400 Sobic005G098800--Sobic005G028100 Sobic005G098800--Sobic010G224700 Sobic004G215900 Sobic004G215900 Sobic005G098800--Sobic004G215900 Sobic002G234300--Sobic002G071400 Sobic004G256000 Sobic004G256000 Sobic002G234300--Sobic004G256000 Sobic002G234300--Sobic008G049100 Sobic001G110600 Sobic001G110600 Sobic002G234300--Sobic001G110600 Sobic009G217200 Sobic009G217200 Sobic002G234300--Sobic009G217200 Sobic001G453400 Sobic001G453400 Sobic002G234300--Sobic001G453400 Sobic010G003400 Sobic010G003400 Sobic002G234300--Sobic010G003400 Sobic002G234300--Sobic009G246500 Sobic002G234300--Sobic003G199300 Sobic008G163500--Sobic005G028100 Sobic008G163500--Sobic003G123200 Sobic008G163500--Sobic009G246500 Sobic008G163500--Sobic010G205900 Sobic008G163500--Sobic008G049100 Sobic008G163500--Sobic005G098800 Sobic001G422500 Sobic001G422500 Sobic008G163500--Sobic001G422500 Sobic008G163500--Sobic010G224700 Sobic004G036700 Sobic004G036700 Sobic008G163500--Sobic004G036700 Sobic004G340400 Sobic004G340400 Sobic006G193300--Sobic004G340400 Sobic006G193300--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic006G193300--Sobic001G461300 Sobic002G408900 Sobic002G408900 Sobic006G193300--Sobic002G408900 Sobic006G193300--Sobic008G049100 Sobic006G193300--Sobic009G246500 Sobic006G125900 Sobic006G125900 Sobic006G193300--Sobic006G125900 Sobic001G401500 Sobic001G401500 Sobic006G193300--Sobic001G401500 Sobic006G193300--Sobic003G199300
Octagon: transcription factors


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