Gene annotation
Transcriptome id Sobic.001G382500.2,Sobic.001G382500.1
Synonym Sb01g036270
Functional annotation AARP2CN domain containing protein, expressed
UniProt A0A1B6QNE5 , C5X0U0
Pfam PF08142 PF04950
Panther DB PTHR12858 PTHR12858:SF2
NCBI CDD KOG1951; GTP-binding protein AARP2 involved in 40S ribosome biogenesis
KEGG Orthology K14569; ribosome biogenesis protein BMS1
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G06720 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g21530.1 : AARP2CN domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002335
Brachypodium KQK21821 , PNT77466
Barley HORVU4Hr1G050710.7 , HORVU4Hr1G050710.6 , HORVU4Hr1G050710.5 , HORVU4Hr1G050710.4 , HORVU4Hr1G050710.3 , HORVU4Hr1G050710.2 , HORVU4Hr1G050710.1 , HORVU4Hr1G050710.9 , HORVU4Hr1G050710.8
Wheat TraesCS4A02G133700 , TraesCS4A02G133700 , TraesCS4D02G173200 , TraesCS4B02G171200 , TraesCS4B02G171200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
2 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
3 Sobic.009G173600 expressed protein K14572: MDN1, midasin
4 Sobic.006G245800 PPR repeat domain containing protein, putative, expressed -
5 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
6 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
7 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
8 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
9 Sobic.010G114900 expressed protein -
10 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
11 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
12 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
13 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
14 Sobic.003G309050 - -
15 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
16 Sobic.006G013100 expressed protein K13205: AAR2, A1 cistron-splicing factor AAR2
17 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
18 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
19 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
20 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22


Gene co-expression network
sample Sobic001G382500 Sobic001G382500 Sobic001G173800 Sobic001G173800 Sobic001G382500--Sobic001G173800 Sobic009G235200 Sobic009G235200 Sobic001G382500--Sobic009G235200 Sobic009G173600 Sobic009G173600 Sobic001G382500--Sobic009G173600 Sobic006G245800 Sobic006G245800 Sobic001G382500--Sobic006G245800 Sobic001G501400 Sobic001G501400 Sobic001G382500--Sobic001G501400 Sobic003G156500 Sobic003G156500 Sobic001G382500--Sobic003G156500 Sobic009G217200 Sobic009G217200 Sobic001G382500--Sobic009G217200 Sobic001G453400 Sobic001G453400 Sobic001G382500--Sobic001G453400 Sobic010G114900 Sobic010G114900 Sobic001G382500--Sobic010G114900 Sobic001G173800--Sobic001G382500 Sobic001G173800--Sobic001G501400 Sobic008G163500 Sobic008G163500 Sobic001G173800--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G173800--Sobic008G049100 Sobic001G173800--Sobic009G173600 Sobic001G173800--Sobic009G235200 Sobic001G173800--Sobic003G156500 Sobic009G246500 Sobic009G246500 Sobic001G173800--Sobic009G246500 Sobic005G000300 Sobic005G000300 Sobic001G173800--Sobic005G000300 Sobic009G235200--Sobic008G163500 Sobic006G226300 Sobic006G226300 Sobic009G235200--Sobic006G226300 Sobic002G142600 Sobic002G142600 Sobic009G235200--Sobic002G142600 Sobic003G042400 Sobic003G042400 Sobic009G235200--Sobic003G042400 Sobic007G014800 Sobic007G014800 Sobic009G235200--Sobic007G014800 Sobic002G399200 Sobic002G399200 Sobic009G235200--Sobic002G399200 Sobic009G235200--Sobic001G173800 Sobic005G199200 Sobic005G199200 Sobic009G235200--Sobic005G199200 Sobic002G263700 Sobic002G263700 Sobic009G235200--Sobic002G263700 Sobic002G071400 Sobic002G071400 Sobic009G173600--Sobic002G071400 Sobic009G173600--Sobic008G049100 Sobic009G173600--Sobic001G173800 Sobic009G173600--Sobic001G382500 Sobic010G205900 Sobic010G205900 Sobic009G173600--Sobic010G205900 Sobic001G544300 Sobic001G544300 Sobic009G173600--Sobic001G544300 Sobic003G123200 Sobic003G123200 Sobic009G173600--Sobic003G123200 Sobic003G199300 Sobic003G199300 Sobic009G173600--Sobic003G199300 Sobic009G173600--Sobic009G246500 Sobic006G245800--Sobic001G382500 Sobic006G245800--Sobic003G156500 Sobic006G245800--Sobic001G501400 Sobic001G355200 Sobic001G355200 Sobic006G245800--Sobic001G355200 Sobic005G137700 Sobic005G137700 Sobic006G245800--Sobic005G137700 Sobic002G378100 Sobic002G378100 Sobic006G245800--Sobic002G378100 Sobic003G059400 Sobic003G059400 Sobic006G245800--Sobic003G059400 Sobic001G171600 Sobic001G171600 Sobic006G245800--Sobic001G171600 Sobic002G373950 Sobic002G373950 Sobic006G245800--Sobic002G373950 Sobic001G358600 Sobic001G358600 Sobic001G501400--Sobic001G358600 Sobic006G128400 Sobic006G128400 Sobic001G501400--Sobic006G128400 Sobic001G501400--Sobic003G156500 Sobic001G501400--Sobic001G173800 Sobic006G125900 Sobic006G125900 Sobic001G501400--Sobic006G125900 Sobic001G501400--Sobic008G049100 Sobic010G003400 Sobic010G003400 Sobic001G501400--Sobic010G003400 Sobic001G501400--Sobic002G378100 Sobic006G193300 Sobic006G193300 Sobic001G501400--Sobic006G193300 Sobic003G156500--Sobic001G453400 Sobic003G156500--Sobic009G217200 Sobic003G156500--Sobic001G501400 Sobic003G156500--Sobic010G003400 Sobic003G260400 Sobic003G260400 Sobic003G156500--Sobic003G260400 Sobic001G503900 Sobic001G503900 Sobic003G156500--Sobic001G503900 Sobic003G156500--Sobic001G358600 Sobic010G102600 Sobic010G102600 Sobic003G156500--Sobic010G102600 Sobic004G320500 Sobic004G320500 Sobic003G156500--Sobic004G320500 Sobic009G217200--Sobic003G156500 Sobic006G221600 Sobic006G221600 Sobic009G217200--Sobic006G221600 Sobic009G217200--Sobic010G003400 Sobic009G217200--Sobic001G453400 Sobic002G234300 Sobic002G234300 Sobic009G217200--Sobic002G234300 Sobic009G217200--Sobic008G049100 Sobic009G217200--Sobic009G246500 Sobic009G217200--Sobic002G071400 Sobic009G217200--Sobic010G114900 Sobic001G453400--Sobic010G003400 Sobic006G086600 Sobic006G086600 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic001G453400--Sobic003G156500 Sobic001G052400 Sobic001G052400 Sobic001G453400--Sobic001G052400 Sobic001G089600 Sobic001G089600 Sobic001G453400--Sobic001G089600 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic001G453400--Sobic010G114900 Sobic007G077900 Sobic007G077900 Sobic010G114900--Sobic007G077900 Sobic004G085000 Sobic004G085000 Sobic010G114900--Sobic004G085000 Sobic010G114900--Sobic001G453400 Sobic003G312100 Sobic003G312100 Sobic010G114900--Sobic003G312100 Sobic007G168300 Sobic007G168300 Sobic010G114900--Sobic007G168300 Sobic010G114900--Sobic010G003400 Sobic007G155500 Sobic007G155500 Sobic010G114900--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic010G114900--Sobic005G010900 Sobic010G114900--Sobic001G052400
Octagon: transcription factors


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