Gene annotation
Transcriptome id Sobic.006G245800.1,Sobic.006G245800.2
Synonym
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1B6PNP0 , A0A1B6PNP1
Pfam PF01535
Panther DB PTHR24015 PTHR24015:SF405
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17616 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g31310.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a057244
Brachypodium KQK16136 , PNT75048
Barley HORVU7Hr1G097920.20 , HORVU7Hr1G097920.8 , HORVU7Hr1G097920.9 , HORVU7Hr1G097920.2 , HORVU7Hr1G097920.3 , HORVU7Hr1G097920.1 , HORVU7Hr1G097920.6 , HORVU7Hr1G097920.7 , HORVU7Hr1G097920.4 , HORVU7Hr1G097920.5 , HORVU7Hr1G097920.18 , HORVU7Hr1G097920.19 , HORVU7Hr1G097920.10 , HORVU7Hr1G097920.11 , HORVU7Hr1G097920.12 , HORVU7Hr1G097920.13 , HORVU7Hr1G097920.14 , HORVU7Hr1G097920.15 , HORVU7Hr1G097920.16 , HORVU7Hr1G097920.17
Wheat TraesCS2D02G351800 , TraesCS2B02G371900 , TraesCS2A02G353800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G382500 AARP2CN domain containing protein, expressed K14569: ribosome biogenesis protein BMS1
2 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
3 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
4 Sobic.001G355200 tRNA pseudouridine synthase family protein, putative, expressed K01855: PUS3, tRNA pseudouridine38/39 synthase
5 Sobic.005G137700 OsFBX409 - F-box domain containing protein, expressed -
6 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
7 Sobic.003G059400 HEAT repeat family protein, putative, expressed K14550: UTP10, U3 small nucleolar RNA-associated protein 10
8 Sobic.001G171600 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
9 Sobic.002G373950 - -
10 Sobic.006G128400 PPR repeat containing protein, expressed -
11 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
12 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
13 Sobic.002G105101 - -
14 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
15 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
16 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
17 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
18 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
19 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
20 Sobic.006G187500 deoxyribonuclease tatD, putative, expressed K03424: TatD DNase family protein


Gene co-expression network
sample Sobic006G245800 Sobic006G245800 Sobic001G382500 Sobic001G382500 Sobic006G245800--Sobic001G382500 Sobic003G156500 Sobic003G156500 Sobic006G245800--Sobic003G156500 Sobic001G501400 Sobic001G501400 Sobic006G245800--Sobic001G501400 Sobic001G355200 Sobic001G355200 Sobic006G245800--Sobic001G355200 Sobic005G137700 Sobic005G137700 Sobic006G245800--Sobic005G137700 Sobic002G378100 Sobic002G378100 Sobic006G245800--Sobic002G378100 Sobic003G059400 Sobic003G059400 Sobic006G245800--Sobic003G059400 Sobic001G171600 Sobic001G171600 Sobic006G245800--Sobic001G171600 Sobic002G373950 Sobic002G373950 Sobic006G245800--Sobic002G373950 Sobic001G173800 Sobic001G173800 Sobic001G382500--Sobic001G173800 Sobic009G235200 Sobic009G235200 Sobic001G382500--Sobic009G235200 Sobic009G173600 Sobic009G173600 Sobic001G382500--Sobic009G173600 Sobic001G382500--Sobic006G245800 Sobic001G382500--Sobic001G501400 Sobic001G382500--Sobic003G156500 Sobic009G217200 Sobic009G217200 Sobic001G382500--Sobic009G217200 Sobic001G453400 Sobic001G453400 Sobic001G382500--Sobic001G453400 Sobic010G114900 Sobic010G114900 Sobic001G382500--Sobic010G114900 Sobic003G156500--Sobic001G453400 Sobic003G156500--Sobic009G217200 Sobic003G156500--Sobic001G501400 Sobic010G003400 Sobic010G003400 Sobic003G156500--Sobic010G003400 Sobic003G260400 Sobic003G260400 Sobic003G156500--Sobic003G260400 Sobic001G503900 Sobic001G503900 Sobic003G156500--Sobic001G503900 Sobic001G358600 Sobic001G358600 Sobic003G156500--Sobic001G358600 Sobic010G102600 Sobic010G102600 Sobic003G156500--Sobic010G102600 Sobic004G320500 Sobic004G320500 Sobic003G156500--Sobic004G320500 Sobic001G501400--Sobic001G358600 Sobic006G128400 Sobic006G128400 Sobic001G501400--Sobic006G128400 Sobic001G501400--Sobic003G156500 Sobic001G501400--Sobic001G173800 Sobic006G125900 Sobic006G125900 Sobic001G501400--Sobic006G125900 Sobic008G049100 Sobic008G049100 Sobic001G501400--Sobic008G049100 Sobic001G501400--Sobic010G003400 Sobic001G501400--Sobic002G378100 Sobic006G193300 Sobic006G193300 Sobic001G501400--Sobic006G193300 Sobic001G393900 Sobic001G393900 Sobic001G355200--Sobic001G393900 Sobic004G340400 Sobic004G340400 Sobic001G355200--Sobic004G340400 Sobic001G052400 Sobic001G052400 Sobic001G355200--Sobic001G052400 Sobic001G355200--Sobic004G320500 Sobic001G346900 Sobic001G346900 Sobic001G355200--Sobic001G346900 Sobic005G200800 Sobic005G200800 Sobic001G355200--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic001G355200--Sobic009G119000 Sobic003G188400 Sobic003G188400 Sobic001G355200--Sobic003G188400 Sobic008G014500 Sobic008G014500 Sobic001G355200--Sobic008G014500 Sobic008G147200 Sobic008G147200 Sobic005G137700--Sobic008G147200 Sobic010G007100 Sobic010G007100 Sobic005G137700--Sobic010G007100 Sobic003G042400 Sobic003G042400 Sobic005G137700--Sobic003G042400 Sobic006G226300 Sobic006G226300 Sobic005G137700--Sobic006G226300 Sobic009G143800 Sobic009G143800 Sobic005G137700--Sobic009G143800 Sobic005G137700--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic005G137700--Sobic010G118000 Sobic007G220300 Sobic007G220300 Sobic005G137700--Sobic007G220300 Sobic008G131000 Sobic008G131000 Sobic005G137700--Sobic008G131000 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic010G224700 Sobic010G224700 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic003G059400--Sobic003G260400 Sobic001G191700 Sobic001G191700 Sobic003G059400--Sobic001G191700 Sobic003G059400--Sobic010G003400 Sobic004G019200 Sobic004G019200 Sobic003G059400--Sobic004G019200 Sobic004G030800 Sobic004G030800 Sobic003G059400--Sobic004G030800 Sobic010G053600 Sobic010G053600 Sobic003G059400--Sobic010G053600 Sobic010G079500 Sobic010G079500 Sobic003G059400--Sobic010G079500 Sobic001G004400 Sobic001G004400 Sobic003G059400--Sobic001G004400 Sobic004G085000 Sobic004G085000 Sobic003G059400--Sobic004G085000 Sobic006G086600 Sobic006G086600 Sobic001G171600--Sobic006G086600 Sobic001G171600--Sobic007G220300 Sobic003G171500 Sobic003G171500 Sobic001G171600--Sobic003G171500 Sobic001G214600 Sobic001G214600 Sobic001G171600--Sobic001G214600 Sobic001G171600--Sobic005G137700 Sobic009G204400 Sobic009G204400 Sobic001G171600--Sobic009G204400 Sobic001G089600 Sobic001G089600 Sobic001G171600--Sobic001G089600 Sobic001G334700 Sobic001G334700 Sobic001G171600--Sobic001G334700 Sobic001G171600--Sobic002G373950 Sobic002G373950--Sobic006G086600 Sobic002G373950--Sobic010G003400 Sobic002G373950--Sobic001G453400 Sobic002G373950--Sobic009G213200 Sobic010G174700 Sobic010G174700 Sobic002G373950--Sobic010G174700 Sobic002G373950--Sobic003G260400 Sobic010G115400 Sobic010G115400 Sobic002G373950--Sobic010G115400 Sobic002G373950--Sobic001G089600 Sobic002G373950--Sobic010G102600
Octagon: transcription factors


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