Gene annotation
Transcriptome id Sobic.006G187500.1
Synonym Sb06g026130
Functional annotation deoxyribonuclease tatD, putative, expressed
UniProt C5YEG1
Pfam PF01026
Panther DB PTHR10060
NCBI CDD KOG3020; TatD-related DNase
KEGG Orthology K03424; TatD DNase family protein
Gene Ontology GO:0016888; endodeoxyribonuclease activity, producing 5'-phosphomonoesters


Orthologs (automatic annotation)
TAIR AT5G17570 : TatD related DNase
RAP-DB (Rice) LOC_Os04g48820.2 : deoxyribonuclease tatD, putative, expressed
MaizeGDB (Corn) Zm00025a010119
Brachypodium KQJ84155
Barley -
Wheat TraesCS2D02G394500 , TraesCS2A02G396800 , TraesCS2B02G415100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
2 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
3 Sobic.005G191700 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
4 Sobic.010G255800 expressed protein -
5 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
6 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
7 Sobic.008G147200 tubulin, putative, expressed -
8 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
9 Sobic.004G027300 expressed protein -
10 Sobic.002G309200 FAR1 family protein, expressed -
11 Sobic.003G052800 RST1, putative, expressed -
12 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
13 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
14 Sobic.003G184400 jmjC domain-containing protein 4, putative, expressed -
15 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
16 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
17 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
18 Sobic.004G231600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G058800 tRNA synthetase class II core domain containing protein, expressed K01880: GARS, glycyl-tRNA synthetase
20 Sobic.001G429600 HEAT repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic006G187500 Sobic006G187500 Sobic006G269800 Sobic006G269800 Sobic006G187500--Sobic006G269800 Sobic001G013300 Sobic001G013300 Sobic006G187500--Sobic001G013300 Sobic005G191700 Sobic005G191700 Sobic006G187500--Sobic005G191700 Sobic010G255800 Sobic010G255800 Sobic006G187500--Sobic010G255800 Sobic006G185200 Sobic006G185200 Sobic006G187500--Sobic006G185200 Sobic008G056900 Sobic008G056900 Sobic006G187500--Sobic008G056900 Sobic008G147200 Sobic008G147200 Sobic006G187500--Sobic008G147200 Sobic006G111200 Sobic006G111200 Sobic006G187500--Sobic006G111200 Sobic004G027300 Sobic004G027300 Sobic006G187500--Sobic004G027300 Sobic002G145800 Sobic002G145800 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic001G393900 Sobic001G393900 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G373000 Sobic001G373000 Sobic001G013300--Sobic001G373000 Sobic001G013300--Sobic008G147200 Sobic001G346900 Sobic001G346900 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic001G013300--Sobic001G023800 Sobic005G191700--Sobic006G269800 Sobic005G046900 Sobic005G046900 Sobic005G191700--Sobic005G046900 Sobic005G191700--Sobic002G145800 Sobic005G191700--Sobic001G013300 Sobic005G191700--Sobic003G409200 Sobic008G057000 Sobic008G057000 Sobic005G191700--Sobic008G057000 Sobic003G062300 Sobic003G062300 Sobic005G191700--Sobic003G062300 Sobic001G373400 Sobic001G373400 Sobic005G191700--Sobic001G373400 Sobic002G029100 Sobic002G029100 Sobic005G191700--Sobic002G029100 Sobic010G255800--Sobic006G185200 Sobic004G018300 Sobic004G018300 Sobic010G255800--Sobic004G018300 Sobic010G174700 Sobic010G174700 Sobic010G255800--Sobic010G174700 Sobic002G164800 Sobic002G164800 Sobic010G255800--Sobic002G164800 Sobic004G223600 Sobic004G223600 Sobic010G255800--Sobic004G223600 Sobic002G309200 Sobic002G309200 Sobic010G255800--Sobic002G309200 Sobic004G085000 Sobic004G085000 Sobic010G255800--Sobic004G085000 Sobic007G029200 Sobic007G029200 Sobic010G255800--Sobic007G029200 Sobic002G317200 Sobic002G317200 Sobic010G255800--Sobic002G317200 Sobic002G378100 Sobic002G378100 Sobic006G185200--Sobic002G378100 Sobic006G185200--Sobic004G085000 Sobic006G185200--Sobic008G017100 Sobic001G214600 Sobic001G214600 Sobic006G185200--Sobic001G214600 Sobic009G213200 Sobic009G213200 Sobic006G185200--Sobic009G213200 Sobic010G147833 Sobic010G147833 Sobic006G185200--Sobic010G147833 Sobic006G185200--Sobic004G223600 Sobic004G260100 Sobic004G260100 Sobic006G185200--Sobic004G260100 Sobic001G145400 Sobic001G145400 Sobic006G185200--Sobic001G145400 Sobic009G096100 Sobic009G096100 Sobic008G056900--Sobic009G096100 Sobic001G485600 Sobic001G485600 Sobic008G056900--Sobic001G485600 Sobic008G081600 Sobic008G081600 Sobic008G056900--Sobic008G081600 Sobic007G000400 Sobic007G000400 Sobic008G056900--Sobic007G000400 Sobic002G344500 Sobic002G344500 Sobic008G056900--Sobic002G344500 Sobic007G197400 Sobic007G197400 Sobic008G056900--Sobic007G197400 Sobic004G227100 Sobic004G227100 Sobic008G056900--Sobic004G227100 Sobic007G077700 Sobic007G077700 Sobic008G056900--Sobic007G077700 Sobic001G087100 Sobic001G087100 Sobic008G056900--Sobic001G087100 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic003G042400 Sobic003G042400 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic001G453500 Sobic001G453500 Sobic006G111200--Sobic001G453500 Sobic004G151000 Sobic004G151000 Sobic006G111200--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G111200--Sobic001G368300 Sobic007G060600 Sobic007G060600 Sobic006G111200--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic006G111200--Sobic001G049800 Sobic006G271900 Sobic006G271900 Sobic006G111200--Sobic006G271900 Sobic002G380100 Sobic002G380100 Sobic006G111200--Sobic002G380100 Sobic006G059500 Sobic006G059500 Sobic006G111200--Sobic006G059500 Sobic007G059700 Sobic007G059700 Sobic006G111200--Sobic007G059700 Sobic004G027300--Sobic004G151000 Sobic004G027300--Sobic001G049800 Sobic010G224700 Sobic010G224700 Sobic004G027300--Sobic010G224700 Sobic004G027300--Sobic007G060600 Sobic004G027300--Sobic002G378100 Sobic003G425100 Sobic003G425100 Sobic004G027300--Sobic003G425100 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic002G112600 Sobic002G112600 Sobic004G027300--Sobic002G112600
Octagon: transcription factors


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