Gene annotation
Transcriptome id Sobic.001G171600.2
Synonym Sb01g014995
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1Z5S626 , A0A0G3XSL7
Pfam PF01535 PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF688
NCBI CDD -
KEGG Orthology K17964; leucine-rich PPR motif-containing protein, mitochondrial
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G55840 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g40690.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a007206
Brachypodium PNT74463 , PNT74462 , PNT74461 , PNT74460 , PNT74459
Barley HORVU4Hr1G012780.72 , HORVU4Hr1G012780.70 , HORVU4Hr1G012780.71 , HORVU4Hr1G012780.18 , HORVU4Hr1G012780.19 , HORVU4Hr1G012780.14 , HORVU4Hr1G012780.15 , HORVU4Hr1G012780.16 , HORVU4Hr1G012780.17 , HORVU4Hr1G012780.10 , HORVU4Hr1G012780.11 , HORVU4Hr1G012780.12 , HORVU4Hr1G012780.13 , HORVU4Hr1G012780.21 , HORVU4Hr1G012780.20 , HORVU4Hr1G012780.23 , HORVU4Hr1G012780.22 , HORVU4Hr1G012780.25 , HORVU4Hr1G012780.24 , HORVU4Hr1G012780.27 , HORVU4Hr1G012780.26 , HORVU4Hr1G012780.29 , HORVU4Hr1G012780.28 , HORVU4Hr1G012780.36 , HORVU4Hr1G012780.37 , HORVU4Hr1G012780.34 , HORVU4Hr1G012780.35 , HORVU4Hr1G012780.32 , HORVU4Hr1G012780.33 , HORVU4Hr1G012780.30 , HORVU4Hr1G012780.31 , HORVU4Hr1G012780.38 , HORVU4Hr1G012780.39 , HORVU4Hr1G012780.7 , HORVU4Hr1G012780.4 , HORVU4Hr1G012780.5 , HORVU4Hr1G012780.2 , HORVU4Hr1G012780.3 , HORVU4Hr1G012780.1 , HORVU4Hr1G012780.9 , HORVU4Hr1G012780.6 , HORVU4Hr1G012780.8 , HORVU4Hr1G012780.66 , HORVU4Hr1G012780.43 , HORVU4Hr1G012780.42 , HORVU4Hr1G012780.41 , HORVU4Hr1G012780.40 , HORVU4Hr1G012780.47 , HORVU4Hr1G012780.46 , HORVU4Hr1G012780.45 , HORVU4Hr1G012780.44 , HORVU4Hr1G012780.49 , HORVU4Hr1G012780.48 , HORVU4Hr1G012780.50 , HORVU4Hr1G012780.51 , HORVU4Hr1G012780.52 , HORVU4Hr1G012780.53 , HORVU4Hr1G012780.54 , HORVU4Hr1G012780.55 , HORVU4Hr1G012780.56 , HORVU4Hr1G012780.57 , HORVU4Hr1G012780.58 , HORVU4Hr1G012780.59 , HORVU4Hr1G012780.65 , HORVU4Hr1G012780.64 , HORVU4Hr1G012780.67 , HORVU4Hr1G012780.61 , HORVU4Hr1G012780.60 , HORVU4Hr1G012780.63 , HORVU4Hr1G012780.62 , HORVU4Hr1G012780.69 , HORVU4Hr1G012780.68
Wheat TraesCS4D02G075200 , TraesCS4A02G238200 , TraesCS4A02G238200 , TraesCS4B02G076700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
2 Sobic.007G220300 WD domain, G-beta repeat domain containing protein, expressed K11374: elongator complex protein 2
3 Sobic.003G171500 dnaJ domain containing protein, expressed -
4 Sobic.001G214600 expressed protein -
5 Sobic.005G137700 OsFBX409 - F-box domain containing protein, expressed -
6 Sobic.009G204400 M-phase phosphoprotein 10, putative, expressed K14559: U3 small nucleolar RNA-associated protein MPP10
7 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
8 Sobic.001G334700 OsWAK28 - OsWAK receptor-like protein kinase, expressed -
9 Sobic.002G373950 - -
10 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
11 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
12 Sobic.005G160100 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
13 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
14 Sobic.002G299400 PPR repeat domain containing protein, putative, expressed -
15 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
16 Sobic.008G069700 clathrin assembly protein, putative, expressed -
17 Sobic.009G251200 expressed protein -
18 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
19 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
20 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13


Gene co-expression network
sample Sobic001G171600 Sobic001G171600 Sobic006G086600 Sobic006G086600 Sobic001G171600--Sobic006G086600 Sobic007G220300 Sobic007G220300 Sobic001G171600--Sobic007G220300 Sobic003G171500 Sobic003G171500 Sobic001G171600--Sobic003G171500 Sobic001G214600 Sobic001G214600 Sobic001G171600--Sobic001G214600 Sobic005G137700 Sobic005G137700 Sobic001G171600--Sobic005G137700 Sobic009G204400 Sobic009G204400 Sobic001G171600--Sobic009G204400 Sobic001G089600 Sobic001G089600 Sobic001G171600--Sobic001G089600 Sobic001G334700 Sobic001G334700 Sobic001G171600--Sobic001G334700 Sobic002G373950 Sobic002G373950 Sobic001G171600--Sobic002G373950 Sobic010G003400 Sobic010G003400 Sobic006G086600--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic009G101200 Sobic009G101200 Sobic006G086600--Sobic009G101200 Sobic001G453400 Sobic001G453400 Sobic006G086600--Sobic001G453400 Sobic004G320500 Sobic004G320500 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic007G220300--Sobic006G086600 Sobic008G131000 Sobic008G131000 Sobic007G220300--Sobic008G131000 Sobic002G317200 Sobic002G317200 Sobic007G220300--Sobic002G317200 Sobic007G220300--Sobic001G334700 Sobic007G220300--Sobic001G171600 Sobic004G332400 Sobic004G332400 Sobic007G220300--Sobic004G332400 Sobic001G081000 Sobic001G081000 Sobic007G220300--Sobic001G081000 Sobic007G220300--Sobic003G171500 Sobic007G207200 Sobic007G207200 Sobic007G220300--Sobic007G207200 Sobic006G055200 Sobic006G055200 Sobic003G171500--Sobic006G055200 Sobic003G171500--Sobic006G086600 Sobic003G171500--Sobic007G207200 Sobic003G171500--Sobic002G317200 Sobic005G160100 Sobic005G160100 Sobic003G171500--Sobic005G160100 Sobic003G171500--Sobic007G220300 Sobic003G032700 Sobic003G032700 Sobic003G171500--Sobic003G032700 Sobic001G020000 Sobic001G020000 Sobic003G171500--Sobic001G020000 Sobic004G131300 Sobic004G131300 Sobic003G171500--Sobic004G131300 Sobic004G260100 Sobic004G260100 Sobic001G214600--Sobic004G260100 Sobic009G247400 Sobic009G247400 Sobic001G214600--Sobic009G247400 Sobic009G084900 Sobic009G084900 Sobic001G214600--Sobic009G084900 Sobic010G147833 Sobic010G147833 Sobic001G214600--Sobic010G147833 Sobic001G214600--Sobic002G317200 Sobic004G223600 Sobic004G223600 Sobic001G214600--Sobic004G223600 Sobic006G234700 Sobic006G234700 Sobic001G214600--Sobic006G234700 Sobic001G219900 Sobic001G219900 Sobic001G214600--Sobic001G219900 Sobic001G493200 Sobic001G493200 Sobic001G214600--Sobic001G493200 Sobic008G147200 Sobic008G147200 Sobic005G137700--Sobic008G147200 Sobic005G137700--Sobic010G007100 Sobic003G042400 Sobic003G042400 Sobic005G137700--Sobic003G042400 Sobic006G226300 Sobic006G226300 Sobic005G137700--Sobic006G226300 Sobic009G143800 Sobic009G143800 Sobic005G137700--Sobic009G143800 Sobic008G014500 Sobic008G014500 Sobic005G137700--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic005G137700--Sobic010G118000 Sobic005G137700--Sobic007G220300 Sobic005G137700--Sobic008G131000 Sobic009G204400--Sobic001G171600 Sobic001G274900 Sobic001G274900 Sobic009G204400--Sobic001G274900 Sobic010G276900 Sobic010G276900 Sobic009G204400--Sobic010G276900 Sobic003G258900 Sobic003G258900 Sobic009G204400--Sobic003G258900 Sobic009G204400--Sobic010G007100 Sobic009G204400--Sobic006G086600 Sobic002G275600 Sobic002G275600 Sobic009G204400--Sobic002G275600 Sobic009G204400--Sobic004G320500 Sobic001G014100 Sobic001G014100 Sobic009G204400--Sobic001G014100 Sobic003G095900 Sobic003G095900 Sobic001G089600--Sobic003G095900 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic001G089600--Sobic009G084900 Sobic001G334700--Sobic004G260100 Sobic001G334700--Sobic002G397500 Sobic003G014500 Sobic003G014500 Sobic001G334700--Sobic003G014500 Sobic001G280900 Sobic001G280900 Sobic001G334700--Sobic001G280900 Sobic002G362800 Sobic002G362800 Sobic001G334700--Sobic002G362800 Sobic003G164200 Sobic003G164200 Sobic001G334700--Sobic003G164200 Sobic008G150700 Sobic008G150700 Sobic001G334700--Sobic008G150700 Sobic001G334700--Sobic007G220300 Sobic006G040800 Sobic006G040800 Sobic001G334700--Sobic006G040800 Sobic002G373950--Sobic006G086600 Sobic002G373950--Sobic010G003400 Sobic002G373950--Sobic001G453400 Sobic009G213200 Sobic009G213200 Sobic002G373950--Sobic009G213200 Sobic010G174700 Sobic010G174700 Sobic002G373950--Sobic010G174700 Sobic003G260400 Sobic003G260400 Sobic002G373950--Sobic003G260400 Sobic002G373950--Sobic010G115400 Sobic002G373950--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic002G373950--Sobic010G102600
Octagon: transcription factors


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