Gene annotation
Transcriptome id Sobic.003G059400.1
Synonym Sb03g005100
Functional annotation HEAT repeat family protein, putative, expressed
UniProt A0A1B6Q1J4
Pfam PF12397 PF08146
Panther DB PTHR13457 PTHR13457:SF1
NCBI CDD KOG1837; Uncharacterized conserved protein
KEGG Orthology K14550; UTP10, U3 small nucleolar RNA-associated protein 10
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G06530 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os04g46310.1 : HEAT repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023348
Brachypodium KQJ83918
Barley HORVU2Hr1G098020.7 , HORVU2Hr1G098020.6 , HORVU2Hr1G098020.5 , HORVU2Hr1G098020.4 , HORVU2Hr1G098020.3 , HORVU2Hr1G098020.2 , HORVU2Hr1G098020.1 , HORVU2Hr1G098020.9 , HORVU2Hr1G098020.8 , HORVU2Hr1G098020.19 , HORVU2Hr1G098020.18 , HORVU2Hr1G098020.17 , HORVU2Hr1G098020.16 , HORVU2Hr1G098020.15 , HORVU2Hr1G098020.14 , HORVU2Hr1G098020.13 , HORVU2Hr1G098020.12 , HORVU2Hr1G098020.11 , HORVU2Hr1G098020.10 , HORVU2Hr1G098020.22 , HORVU2Hr1G098020.23 , HORVU2Hr1G098020.20 , HORVU2Hr1G098020.21
Wheat TraesCS2B02G435400 , TraesCS2D02G413500 , TraesCS2A02G416500 , TraesCS2A02G416500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
2 Sobic.001G191700 expressed protein -
3 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
4 Sobic.004G019200 DNA-directed RNA polymerase I subunit RPA2, putative, expressed K03002: RPA2, DNA-directed RNA polymerase I subunit RPA2
5 Sobic.004G030800 expressed protein -
6 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
7 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
8 Sobic.001G004400 - K14290: XPO1, exportin-1
9 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
10 Sobic.002G316600 expressed protein -
11 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23
12 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
13 Sobic.007G056200 HEAT repeat family protein, putative, expressed -
14 Sobic.001G299700 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
15 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
16 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
17 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
18 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
19 Sobic.007G165600 aminopeptidase, putative, expressed K01256: aminopeptidase N
20 Sobic.008G016300 expressed protein -


Gene co-expression network
sample Sobic003G059400 Sobic003G059400 Sobic003G260400 Sobic003G260400 Sobic003G059400--Sobic003G260400 Sobic001G191700 Sobic001G191700 Sobic003G059400--Sobic001G191700 Sobic010G003400 Sobic010G003400 Sobic003G059400--Sobic010G003400 Sobic004G019200 Sobic004G019200 Sobic003G059400--Sobic004G019200 Sobic004G030800 Sobic004G030800 Sobic003G059400--Sobic004G030800 Sobic010G053600 Sobic010G053600 Sobic003G059400--Sobic010G053600 Sobic010G079500 Sobic010G079500 Sobic003G059400--Sobic010G079500 Sobic001G004400 Sobic001G004400 Sobic003G059400--Sobic001G004400 Sobic004G085000 Sobic004G085000 Sobic003G059400--Sobic004G085000 Sobic003G260400--Sobic010G079500 Sobic003G095900 Sobic003G095900 Sobic003G260400--Sobic003G095900 Sobic002G399800 Sobic002G399800 Sobic003G260400--Sobic002G399800 Sobic003G101700 Sobic003G101700 Sobic003G260400--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic003G260400--Sobic002G316600 Sobic003G260400--Sobic010G003400 Sobic001G089600 Sobic001G089600 Sobic003G260400--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic003G260400--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic003G260400--Sobic001G393900 Sobic001G299700 Sobic001G299700 Sobic001G191700--Sobic001G299700 Sobic001G542400 Sobic001G542400 Sobic001G191700--Sobic001G542400 Sobic001G191700--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic001G191700--Sobic005G162500 Sobic001G400500 Sobic001G400500 Sobic001G191700--Sobic001G400500 Sobic009G109200 Sobic009G109200 Sobic001G191700--Sobic009G109200 Sobic004G248600 Sobic004G248600 Sobic001G191700--Sobic004G248600 Sobic006G032300 Sobic006G032300 Sobic001G191700--Sobic006G032300 Sobic001G117200 Sobic001G117200 Sobic001G191700--Sobic001G117200 Sobic006G086600 Sobic006G086600 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic001G052400 Sobic001G052400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic010G003400--Sobic003G260400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic010G003400--Sobic001G089600 Sobic010G003400--Sobic004G030800 Sobic003G308500 Sobic003G308500 Sobic004G019200--Sobic003G308500 Sobic002G317200 Sobic002G317200 Sobic004G019200--Sobic002G317200 Sobic004G019200--Sobic001G089600 Sobic001G145400 Sobic001G145400 Sobic004G019200--Sobic001G145400 Sobic001G020000 Sobic001G020000 Sobic004G019200--Sobic001G020000 Sobic001G429600 Sobic001G429600 Sobic004G019200--Sobic001G429600 Sobic010G115400 Sobic010G115400 Sobic004G019200--Sobic010G115400 Sobic004G019200--Sobic006G086600 Sobic004G019200--Sobic002G399800 Sobic004G030800--Sobic010G003400 Sobic004G030800--Sobic001G052400 Sobic004G025800 Sobic004G025800 Sobic004G030800--Sobic004G025800 Sobic008G051200 Sobic008G051200 Sobic004G030800--Sobic008G051200 Sobic007G075800 Sobic007G075800 Sobic004G030800--Sobic007G075800 Sobic004G030800--Sobic003G260400 Sobic004G030800--Sobic009G101200 Sobic004G030800--Sobic010G053600 Sobic004G030800--Sobic001G004400 Sobic001G352900 Sobic001G352900 Sobic010G053600--Sobic001G352900 Sobic002G391600 Sobic002G391600 Sobic010G053600--Sobic002G391600 Sobic010G053600--Sobic009G109200 Sobic010G053600--Sobic001G004400 Sobic007G171100 Sobic007G171100 Sobic010G053600--Sobic007G171100 Sobic004G260100 Sobic004G260100 Sobic010G053600--Sobic004G260100 Sobic006G036100 Sobic006G036100 Sobic010G053600--Sobic006G036100 Sobic010G053600--Sobic004G248600 Sobic004G242400 Sobic004G242400 Sobic010G053600--Sobic004G242400 Sobic001G529600 Sobic001G529600 Sobic010G079500--Sobic001G529600 Sobic010G079500--Sobic002G316600 Sobic010G079500--Sobic009G109200 Sobic001G230000 Sobic001G230000 Sobic010G079500--Sobic001G230000 Sobic006G119400 Sobic006G119400 Sobic010G079500--Sobic006G119400 Sobic001G527800 Sobic001G527800 Sobic010G079500--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic010G079500--Sobic003G196300 Sobic008G132900 Sobic008G132900 Sobic010G079500--Sobic008G132900 Sobic010G079500--Sobic003G260400 Sobic002G133300 Sobic002G133300 Sobic001G004400--Sobic002G133300 Sobic001G110600 Sobic001G110600 Sobic001G004400--Sobic001G110600 Sobic007G054800 Sobic007G054800 Sobic001G004400--Sobic007G054800 Sobic001G004400--Sobic004G248600 Sobic003G312100 Sobic003G312100 Sobic001G004400--Sobic003G312100 Sobic001G493700 Sobic001G493700 Sobic001G004400--Sobic001G493700 Sobic003G221400 Sobic003G221400 Sobic001G004400--Sobic003G221400 Sobic004G276400 Sobic004G276400 Sobic001G004400--Sobic004G276400 Sobic002G179400 Sobic002G179400 Sobic001G004400--Sobic002G179400 Sobic004G085000--Sobic001G145400 Sobic010G114900 Sobic010G114900 Sobic004G085000--Sobic010G114900 Sobic006G185200 Sobic006G185200 Sobic004G085000--Sobic006G185200 Sobic003G199300 Sobic003G199300 Sobic004G085000--Sobic003G199300 Sobic005G010900 Sobic005G010900 Sobic004G085000--Sobic005G010900 Sobic001G219900 Sobic001G219900 Sobic004G085000--Sobic001G219900 Sobic002G430300 Sobic002G430300 Sobic004G085000--Sobic002G430300 Sobic004G085000--Sobic009G101200 Sobic004G085000--Sobic006G086600
Octagon: transcription factors


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