Gene annotation
Transcriptome id Sobic.007G157000.1,Sobic.007G157000.2
Synonym Sb07g023060
Functional annotation protein transport protein, putative, expressed
UniProt C5YMB3
Pfam PF00626 PF04810 PF04815 PF08033 PF04811
Panther DB PTHR11141 PTHR11141:SF2
NCBI CDD -
KEGG Orthology K14006; protein transport protein SEC23
Gene Ontology GO:0008270; zinc ion binding GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT2G21630 : Sec23/Sec24 protein transport family protein
RAP-DB (Rice) LOC_Os08g36994.1 : protein transport protein, putative, expressed
MaizeGDB (Corn) Zm00025a014082
Brachypodium KQJ98571 , KQJ90533 , KQJ98623 , KQJ98624
Barley HORVU4Hr1G014740.4 , HORVU4Hr1G014740.5 , HORVU4Hr1G014740.6 , HORVU4Hr1G014740.7 , HORVU4Hr1G014740.1 , HORVU4Hr1G014740.2 , HORVU4Hr1G014740.3 , HORVU4Hr1G014740.8 , HORVU5Hr1G068810.6 , HORVU5Hr1G068810.7 , HORVU5Hr1G068810.4 , HORVU5Hr1G068810.5 , HORVU5Hr1G068810.2 , HORVU5Hr1G068810.3 , HORVU4Hr1G014740.14 , HORVU4Hr1G014740.15 , HORVU4Hr1G014740.12 , HORVU4Hr1G014740.13 , HORVU4Hr1G014740.10 , HORVU4Hr1G014740.11 , HORVU4Hr1G014740.9
Wheat TraesCS5D02G247600 , TraesCS4D02G083800 , TraesCS6B02G307800 , TraesCS5A02G241100 , TraesCS5A02G241100 , TraesCS4B02G085800 , TraesCS5B02G239200 , TraesCS5D02G247600 , TraesCS4A02G230100
Populus -


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cDNA sequences
Sobic.007G157000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
2 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
3 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
4 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
5 Sobic.004G314000 expressed protein -
6 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
7 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
8 Sobic.002G397500 SAC3/GANP family protein, expressed -
9 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
10 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
11 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
12 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
13 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
14 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
15 Sobic.001G219900 expressed protein -
16 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
17 Sobic.001G261501 - -
18 Sobic.005G191900 transporter family protein, putative, expressed -
19 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
20 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2


Gene co-expression network
sample Sobic007G157000 Sobic007G157000 Sobic010G139000 Sobic010G139000 Sobic007G157000--Sobic010G139000 Sobic001G311500 Sobic001G311500 Sobic007G157000--Sobic001G311500 Sobic010G112100 Sobic010G112100 Sobic007G157000--Sobic010G112100 Sobic005G008800 Sobic005G008800 Sobic007G157000--Sobic005G008800 Sobic004G314000 Sobic004G314000 Sobic007G157000--Sobic004G314000 Sobic009G109200 Sobic009G109200 Sobic007G157000--Sobic009G109200 Sobic001G219600 Sobic001G219600 Sobic007G157000--Sobic001G219600 Sobic002G397500 Sobic002G397500 Sobic007G157000--Sobic002G397500 Sobic003G408600 Sobic003G408600 Sobic007G157000--Sobic003G408600 Sobic010G139000--Sobic004G314000 Sobic005G112300 Sobic005G112300 Sobic010G139000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800 Sobic001G311500--Sobic010G139000 Sobic009G247400 Sobic009G247400 Sobic001G311500--Sobic009G247400 Sobic001G311500--Sobic005G112300 Sobic003G059750 Sobic003G059750 Sobic001G311500--Sobic003G059750 Sobic008G009700 Sobic008G009700 Sobic001G311500--Sobic008G009700 Sobic001G311500--Sobic004G314000 Sobic001G311500--Sobic010G279450 Sobic008G028700 Sobic008G028700 Sobic001G311500--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic001G311500--Sobic001G363500 Sobic003G360400 Sobic003G360400 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic001G433800 Sobic001G433800 Sobic010G112100--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic004G242400 Sobic004G242400 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic005G008800--Sobic004G314000 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic005G008800--Sobic009G109200 Sobic004G314000--Sobic010G139000 Sobic004G314000--Sobic005G008800 Sobic004G314000--Sobic005G112300 Sobic004G314000--Sobic010G279450 Sobic004G314000--Sobic004G242400 Sobic004G314000--Sobic010G206900 Sobic003G401600 Sobic003G401600 Sobic004G314000--Sobic003G401600 Sobic002G309600 Sobic002G309600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic010G105200 Sobic010G105200 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic009G109200--Sobic001G540400 Sobic009G109200--Sobic005G008800 Sobic004G276400 Sobic004G276400 Sobic009G109200--Sobic004G276400 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic009G260500 Sobic009G260500 Sobic001G219600--Sobic009G260500 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic002G397500--Sobic003G408600 Sobic002G397500--Sobic007G062800 Sobic002G397500--Sobic005G112300 Sobic002G397500--Sobic001G540400 Sobic002G397500--Sobic009G109200 Sobic003G072200 Sobic003G072200 Sobic002G397500--Sobic003G072200 Sobic002G397500--Sobic004G242400 Sobic002G397500--Sobic004G276400 Sobic002G397500--Sobic010G112100 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic003G408600--Sobic002G397500 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600
Octagon: transcription factors


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