Gene annotation
Transcriptome id Sobic.003G349000.1
Synonym ATTIP49A, RIN1, Sb03g039200
Functional annotation ruvB-like, putative, expressed
UniProt C5XP35
Pfam PF06068
Panther DB PTHR11093
NCBI CDD -
KEGG Orthology K04499; RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
Gene Ontology GO:0005524; ATP binding GO:0003678DNA helicase activity


Orthologs (automatic annotation)
TAIR AT5G22330 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os07g08170.1 : ruvB-like, putative, expressed
MaizeGDB (Corn) Zm00025a034977 , Zm00025a018830
Brachypodium KQK10483
Barley HORVU4Hr1G006840.30 , HORVU4Hr1G006800.1 , HORVU4Hr1G006800.2 , HORVU4Hr1G006840.18 , HORVU4Hr1G006840.19 , HORVU4Hr1G006840.16 , HORVU4Hr1G006840.17 , HORVU4Hr1G006840.14 , HORVU4Hr1G006840.15 , HORVU4Hr1G006840.12 , HORVU4Hr1G006840.13 , HORVU4Hr1G006840.10 , HORVU4Hr1G006840.11 , HORVU4Hr1G006840.27 , HORVU4Hr1G006840.26 , HORVU4Hr1G006840.25 , HORVU4Hr1G006840.24 , HORVU4Hr1G006840.23 , HORVU4Hr1G006840.22 , HORVU4Hr1G006840.21 , HORVU4Hr1G006840.20 , HORVU4Hr1G006840.29 , HORVU4Hr1G006840.28 , HORVU4Hr1G006840.8 , HORVU4Hr1G006840.9 , HORVU4Hr1G006840.4 , HORVU4Hr1G006840.5 , HORVU4Hr1G006840.6 , HORVU4Hr1G006840.7 , HORVU4Hr1G006840.1 , HORVU4Hr1G006840.2 , HORVU4Hr1G006840.3 , HORVU1Hr1G084700.1 , HORVU1Hr1G084700.2 , HORVU1Hr1G084700.3 , HORVU1Hr1G084700.4 , HORVU1Hr1G084700.5 , HORVU1Hr1G084700.6 , HORVU1Hr1G084700.7 , HORVU1Hr1G084700.8 , HORVU1Hr1G084700.9
Wheat TraesCS4A02G271400 , TraesCS3B02G047500 , TraesCS4A02G271400 , TraesCS3A02G036500 , TraesCS3A02G036500 , TraesCS3D02G043600 , TraesCS4B02G042600 , TraesCS4B02G042600 , TraesCS4D02G040000 , TraesCS4D02G040000
Populus -


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cDNA sequences
Sobic.003G349000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G154400 MIM, putative, expressed -
2 Sobic.002G312800 WD domain, G-beta repeat domain containing protein, expressed K14841: NSA1, ribosome biogenesis protein NSA1
3 Sobic.001G141700 acidic leucine-rich nuclear phosphoprotein 32-related protein 2, putative, expressed K18647: acidic leucine-rich nuclear phosphoprotein 32 family member B
4 Sobic.003G282700 protein kri1, putative, expressed K14786: protein KRI1
5 Sobic.007G053700 MYB family transcription factor, putative, expressed -
6 Sobic.010G237800 ZOS1-21 - C2H2 zinc finger protein, expressed -
7 Sobic.009G042100 MA3 domain containing protein, expressed K17583: nucleolar MIF4G domain-containing protein 1
8 Sobic.010G241600 RNASEH2A - Putative ribonuclease H2 large subunit, expressed K10743: ribonuclease H2 subunit A
9 Sobic.002G056000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C-5 cytosine-specific DNA methylase, putative, expressed K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
10 Sobic.007G153700 transcription regulator, putative, expressed -
11 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
12 Sobic.003G072500 transcription factor X1, putative, expressed -
13 Sobic.001G458000 expressed protein -
14 Sobic.006G140300 expressed protein -
15 Sobic.010G105050 - -
16 Sobic.006G106200 NAP domain containing protein, putative, expressed K11290: SET, TAF1, template-activating factor I
17 Sobic.006G095400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K14826: FK506-binding nuclear protein
18 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
19 Sobic.008G065932 - -
20 Sobic.005G114101 - -


Gene co-expression network
sample Sobic003G349000 Sobic003G349000 Sobic002G154400 Sobic002G154400 Sobic003G349000--Sobic002G154400 Sobic002G312800 Sobic002G312800 Sobic003G349000--Sobic002G312800 Sobic001G141700 Sobic001G141700 Sobic003G349000--Sobic001G141700 Sobic003G282700 Sobic003G282700 Sobic003G349000--Sobic003G282700 Sobic007G053700 Sobic007G053700 Sobic003G349000--Sobic007G053700 Sobic010G237800 Sobic010G237800 Sobic003G349000--Sobic010G237800 Sobic009G042100 Sobic009G042100 Sobic003G349000--Sobic009G042100 Sobic010G241600 Sobic010G241600 Sobic003G349000--Sobic010G241600 Sobic002G056000 Sobic002G056000 Sobic003G349000--Sobic002G056000 Sobic002G154400--Sobic009G042100 Sobic007G039300 Sobic007G039300 Sobic002G154400--Sobic007G039300 Sobic002G154400--Sobic007G053700 Sobic002G154400--Sobic003G349000 Sobic010G240800 Sobic010G240800 Sobic002G154400--Sobic010G240800 Sobic004G020900 Sobic004G020900 Sobic002G154400--Sobic004G020900 Sobic009G032200 Sobic009G032200 Sobic002G154400--Sobic009G032200 Sobic008G017900 Sobic008G017900 Sobic002G154400--Sobic008G017900 Sobic009G069200 Sobic009G069200 Sobic002G154400--Sobic009G069200 Sobic001G466600 Sobic001G466600 Sobic002G312800--Sobic001G466600 Sobic006G095400 Sobic006G095400 Sobic002G312800--Sobic006G095400 Sobic002G312800--Sobic003G349000 Sobic001G299800 Sobic001G299800 Sobic002G312800--Sobic001G299800 Sobic002G312800--Sobic002G154400 Sobic002G312800--Sobic010G241600 Sobic002G312800--Sobic009G042100 Sobic002G312800--Sobic003G282700 Sobic002G312800--Sobic007G053700 Sobic002G293400 Sobic002G293400 Sobic001G141700--Sobic002G293400 Sobic001G141700--Sobic003G349000 Sobic001G141700--Sobic010G237800 Sobic001G141700--Sobic010G241600 Sobic002G003000 Sobic002G003000 Sobic001G141700--Sobic002G003000 Sobic001G158300 Sobic001G158300 Sobic001G141700--Sobic001G158300 Sobic008G022200 Sobic008G022200 Sobic001G141700--Sobic008G022200 Sobic001G141700--Sobic003G282700 Sobic001G399600 Sobic001G399600 Sobic001G141700--Sobic001G399600 Sobic007G188200 Sobic007G188200 Sobic003G282700--Sobic007G188200 Sobic003G282700--Sobic003G349000 Sobic003G282700--Sobic010G241600 Sobic003G282700--Sobic007G053700 Sobic004G027700 Sobic004G027700 Sobic003G282700--Sobic004G027700 Sobic003G072500 Sobic003G072500 Sobic003G282700--Sobic003G072500 Sobic003G282700--Sobic002G154400 Sobic001G177400 Sobic001G177400 Sobic003G282700--Sobic001G177400 Sobic003G282700--Sobic010G237800 Sobic007G053700--Sobic002G154400 Sobic007G053700--Sobic003G349000 Sobic009G190200 Sobic009G190200 Sobic007G053700--Sobic009G190200 Sobic007G053700--Sobic003G282700 Sobic009G235200 Sobic009G235200 Sobic007G053700--Sobic009G235200 Sobic005G114101 Sobic005G114101 Sobic007G053700--Sobic005G114101 Sobic002G009800 Sobic002G009800 Sobic007G053700--Sobic002G009800 Sobic007G053700--Sobic002G312800 Sobic002G053200 Sobic002G053200 Sobic007G053700--Sobic002G053200 Sobic003G289700 Sobic003G289700 Sobic010G237800--Sobic003G289700 Sobic008G070700 Sobic008G070700 Sobic010G237800--Sobic008G070700 Sobic010G237800--Sobic001G158300 Sobic006G106200 Sobic006G106200 Sobic010G237800--Sobic006G106200 Sobic003G013800 Sobic003G013800 Sobic010G237800--Sobic003G013800 Sobic002G374200 Sobic002G374200 Sobic010G237800--Sobic002G374200 Sobic010G212700 Sobic010G212700 Sobic010G237800--Sobic010G212700 Sobic007G153700 Sobic007G153700 Sobic010G237800--Sobic007G153700 Sobic002G196500 Sobic002G196500 Sobic010G237800--Sobic002G196500 Sobic001G206500 Sobic001G206500 Sobic009G042100--Sobic001G206500 Sobic009G042100--Sobic002G154400 Sobic003G206600 Sobic003G206600 Sobic009G042100--Sobic003G206600 Sobic009G042100--Sobic009G069200 Sobic009G042100--Sobic008G017900 Sobic009G043400 Sobic009G043400 Sobic009G042100--Sobic009G043400 Sobic009G042100--Sobic003G349000 Sobic009G042100--Sobic002G312800 Sobic009G042100--Sobic010G240800 Sobic010G241600--Sobic001G466600 Sobic010G241600--Sobic010G237800 Sobic010G241600--Sobic003G282700 Sobic010G241600--Sobic001G141700 Sobic010G241600--Sobic006G106200 Sobic004G350200 Sobic004G350200 Sobic010G241600--Sobic004G350200 Sobic010G241600--Sobic002G312800 Sobic010G241600--Sobic003G349000 Sobic010G021900 Sobic010G021900 Sobic010G241600--Sobic010G021900 Sobic001G005800 Sobic001G005800 Sobic002G056000--Sobic001G005800 Sobic001G123100 Sobic001G123100 Sobic002G056000--Sobic001G123100 Sobic002G253900 Sobic002G253900 Sobic002G056000--Sobic002G253900 Sobic001G507000 Sobic001G507000 Sobic002G056000--Sobic001G507000 Sobic009G148000 Sobic009G148000 Sobic002G056000--Sobic009G148000 Sobic003G103701 Sobic003G103701 Sobic002G056000--Sobic003G103701 Sobic009G254000 Sobic009G254000 Sobic002G056000--Sobic009G254000 Sobic002G006100 Sobic002G006100 Sobic002G056000--Sobic002G006100 Sobic002G254800 Sobic002G254800 Sobic002G056000--Sobic002G254800
Octagon: transcription factors


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