Gene annotation
Transcriptome id Sobic.002G154400.1
Synonym ATRAD18, MIM, Sb02g019360, SMC6B
Functional annotation MIM, putative, expressed
UniProt C5X880
Pfam PF02463
Panther DB PTHR19306 PTHR19306:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G61460 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os09g03370.1 : MIM, putative, expressed
MaizeGDB (Corn) Zm00025a046320
Brachypodium KQJ86934 , KQJ86930 , KQJ86931 , KQJ86932 , KQJ86933 , PNT62808 , PNT62809 , KQJ86929 , KQJ86928 , PNT62810
Barley HORVU5Hr1G050720.13 , HORVU5Hr1G050720.12 , HORVU5Hr1G050720.11 , HORVU5Hr1G050720.10 , HORVU5Hr1G050720.15 , HORVU5Hr1G050720.14 , HORVU6Hr1G010370.1 , HORVU5Hr1G050720.3 , HORVU5Hr1G050720.2 , HORVU5Hr1G050720.1 , HORVU5Hr1G050720.7 , HORVU5Hr1G050720.6 , HORVU5Hr1G050720.5 , HORVU5Hr1G050720.4 , HORVU5Hr1G050720.9 , HORVU5Hr1G050720.8
Wheat TraesCS5A02G162400 , TraesCSU02G112500 , TraesCS6B02G071100 , TraesCS5D02G166500 , TraesCS5B02G159900 , TraesCS5B02G159900 , TraesCS5B02G159900 , TraesCS5B02G159900 , TraesCS5B02G159900
Populus -


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cDNA sequences
Sobic.002G154400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G042100 MA3 domain containing protein, expressed K17583: nucleolar MIF4G domain-containing protein 1
2 Sobic.007G039300 ATP-binding region, ATPase-like domain containing protein, expressed -
3 Sobic.007G053700 MYB family transcription factor, putative, expressed -
4 Sobic.003G349000 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
5 Sobic.010G240800 REV1, putative, expressed K03515: DNA repair protein REV1
6 Sobic.004G020900 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
7 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
8 Sobic.008G017900 expressed protein -
9 Sobic.009G069200 glycine-rich protein, putative, expressed -
10 Sobic.003G206600 glycine-rich protein, putative, expressed -
11 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
12 Sobic.010G233000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
13 Sobic.005G114101 - -
14 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
15 Sobic.002G312800 WD domain, G-beta repeat domain containing protein, expressed K14841: NSA1, ribosome biogenesis protein NSA1
16 Sobic.003G282700 protein kri1, putative, expressed K14786: protein KRI1
17 Sobic.007G004000 YL1 nuclear protein C-terminal domain containing protein, expressed K11664: VPS72, TCFL1, vacuolar protein sorting-associated protein 72
18 Sobic.009G190200 transcription elongation factor SPT5 homolog 1, putative, expressed -
19 Sobic.002G263700 bromodomain protein 103, putative, expressed -
20 Sobic.001G382500 AARP2CN domain containing protein, expressed K14569: ribosome biogenesis protein BMS1


Gene co-expression network
sample Sobic002G154400 Sobic002G154400 Sobic009G042100 Sobic009G042100 Sobic002G154400--Sobic009G042100 Sobic007G039300 Sobic007G039300 Sobic002G154400--Sobic007G039300 Sobic007G053700 Sobic007G053700 Sobic002G154400--Sobic007G053700 Sobic003G349000 Sobic003G349000 Sobic002G154400--Sobic003G349000 Sobic010G240800 Sobic010G240800 Sobic002G154400--Sobic010G240800 Sobic004G020900 Sobic004G020900 Sobic002G154400--Sobic004G020900 Sobic009G032200 Sobic009G032200 Sobic002G154400--Sobic009G032200 Sobic008G017900 Sobic008G017900 Sobic002G154400--Sobic008G017900 Sobic009G069200 Sobic009G069200 Sobic002G154400--Sobic009G069200 Sobic001G206500 Sobic001G206500 Sobic009G042100--Sobic001G206500 Sobic009G042100--Sobic002G154400 Sobic003G206600 Sobic003G206600 Sobic009G042100--Sobic003G206600 Sobic009G042100--Sobic009G069200 Sobic009G042100--Sobic008G017900 Sobic009G043400 Sobic009G043400 Sobic009G042100--Sobic009G043400 Sobic009G042100--Sobic003G349000 Sobic002G312800 Sobic002G312800 Sobic009G042100--Sobic002G312800 Sobic009G042100--Sobic010G240800 Sobic007G039300--Sobic004G020900 Sobic007G039300--Sobic008G017900 Sobic007G039300--Sobic002G154400 Sobic002G263700 Sobic002G263700 Sobic007G039300--Sobic002G263700 Sobic004G350200 Sobic004G350200 Sobic007G039300--Sobic004G350200 Sobic003G124600 Sobic003G124600 Sobic007G039300--Sobic003G124600 Sobic010G269300 Sobic010G269300 Sobic007G039300--Sobic010G269300 Sobic003G113300 Sobic003G113300 Sobic007G039300--Sobic003G113300 Sobic003G130900 Sobic003G130900 Sobic007G039300--Sobic003G130900 Sobic007G053700--Sobic002G154400 Sobic007G053700--Sobic003G349000 Sobic009G190200 Sobic009G190200 Sobic007G053700--Sobic009G190200 Sobic003G282700 Sobic003G282700 Sobic007G053700--Sobic003G282700 Sobic009G235200 Sobic009G235200 Sobic007G053700--Sobic009G235200 Sobic005G114101 Sobic005G114101 Sobic007G053700--Sobic005G114101 Sobic002G009800 Sobic002G009800 Sobic007G053700--Sobic002G009800 Sobic007G053700--Sobic002G312800 Sobic002G053200 Sobic002G053200 Sobic007G053700--Sobic002G053200 Sobic003G349000--Sobic002G154400 Sobic003G349000--Sobic002G312800 Sobic001G141700 Sobic001G141700 Sobic003G349000--Sobic001G141700 Sobic003G349000--Sobic003G282700 Sobic003G349000--Sobic007G053700 Sobic010G237800 Sobic010G237800 Sobic003G349000--Sobic010G237800 Sobic003G349000--Sobic009G042100 Sobic010G241600 Sobic010G241600 Sobic003G349000--Sobic010G241600 Sobic002G056000 Sobic002G056000 Sobic003G349000--Sobic002G056000 Sobic010G240800--Sobic002G154400 Sobic008G057000 Sobic008G057000 Sobic010G240800--Sobic008G057000 Sobic001G222000 Sobic001G222000 Sobic010G240800--Sobic001G222000 Sobic010G240800--Sobic009G032200 Sobic010G240800--Sobic007G039300 Sobic007G004000 Sobic007G004000 Sobic010G240800--Sobic007G004000 Sobic001G355200 Sobic001G355200 Sobic010G240800--Sobic001G355200 Sobic010G240800--Sobic002G263700 Sobic007G168300 Sobic007G168300 Sobic010G240800--Sobic007G168300 Sobic004G020900--Sobic007G039300 Sobic004G043750 Sobic004G043750 Sobic004G020900--Sobic004G043750 Sobic004G020900--Sobic008G017900 Sobic004G020900--Sobic009G032200 Sobic004G020900--Sobic010G269300 Sobic009G122800 Sobic009G122800 Sobic004G020900--Sobic009G122800 Sobic004G020900--Sobic002G263700 Sobic010G233000 Sobic010G233000 Sobic004G020900--Sobic010G233000 Sobic004G020900--Sobic002G154400 Sobic010G236200 Sobic010G236200 Sobic009G032200--Sobic010G236200 Sobic009G032200--Sobic010G233000 Sobic009G032200--Sobic010G269300 Sobic009G032200--Sobic004G043750 Sobic009G032200--Sobic008G057000 Sobic009G257500 Sobic009G257500 Sobic009G032200--Sobic009G257500 Sobic003G221500 Sobic003G221500 Sobic009G032200--Sobic003G221500 Sobic010G215900 Sobic010G215900 Sobic009G032200--Sobic010G215900 Sobic001G135500 Sobic001G135500 Sobic009G032200--Sobic001G135500 Sobic008G017900--Sobic004G020900 Sobic002G180900 Sobic002G180900 Sobic008G017900--Sobic002G180900 Sobic008G017900--Sobic007G039300 Sobic008G017900--Sobic009G190200 Sobic008G017900--Sobic002G263700 Sobic008G017900--Sobic009G069200 Sobic008G017900--Sobic002G154400 Sobic006G191200 Sobic006G191200 Sobic008G017900--Sobic006G191200 Sobic008G017900--Sobic003G124600 Sobic009G113100 Sobic009G113100 Sobic009G069200--Sobic009G113100 Sobic003G415100 Sobic003G415100 Sobic009G069200--Sobic003G415100 Sobic010G038900 Sobic010G038900 Sobic009G069200--Sobic010G038900 Sobic002G390400 Sobic002G390400 Sobic009G069200--Sobic002G390400 Sobic005G198200 Sobic005G198200 Sobic009G069200--Sobic005G198200 Sobic002G315100 Sobic002G315100 Sobic009G069200--Sobic002G315100 Sobic001G090300 Sobic001G090300 Sobic009G069200--Sobic001G090300 Sobic005G160200 Sobic005G160200 Sobic009G069200--Sobic005G160200 Sobic008G045800 Sobic008G045800 Sobic009G069200--Sobic008G045800
Octagon: transcription factors


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