Gene annotation
Transcriptome id Sobic.010G240800.2,Sobic.010G240800.1
Synonym REV1, Sb10g028100, ATREV1
Functional annotation REV1, putative, expressed
UniProt A0A194YM72 , A0A1W0VUH7
Pfam PF00533 PF11799 PF00817 PF11799 PF00817
Panther DB PTHR11076 PTHR11076:SF12
NCBI CDD KOG2093; Translesion DNA polymerase - REV1 deoxycytidyl transferase
KEGG Orthology K03515; DNA repair protein REV1
Gene Ontology GO:0006281; DNA repair GO:0003684damaged DNA binding


Orthologs (automatic annotation)
TAIR AT5G44750 : DNA-directed DNA polymerases
RAP-DB (Rice) LOC_Os06g47580.2,LOC_Os06g47580.1 : REV1, putative, expressed
MaizeGDB (Corn) Zm00025a018242
Brachypodium KQK17302 , KQK17301
Barley HORVU7Hr1G099700.27 , HORVU7Hr1G099700.26 , HORVU7Hr1G099700.25 , HORVU7Hr1G099700.24 , HORVU7Hr1G099700.23 , HORVU7Hr1G099700.22 , HORVU7Hr1G099700.21 , HORVU7Hr1G099700.20 , HORVU7Hr1G099700.29 , HORVU7Hr1G099700.28 , HORVU7Hr1G099700.35 , HORVU7Hr1G099700.34 , HORVU7Hr1G099700.36 , HORVU7Hr1G099700.37 , HORVU7Hr1G099700.30 , HORVU7Hr1G099700.31 , HORVU7Hr1G099700.32 , HORVU7Hr1G099700.33 , HORVU7Hr1G099700.38 , HORVU7Hr1G099700.39 , HORVU7Hr1G099700.18 , HORVU7Hr1G099700.19 , HORVU7Hr1G099700.16 , HORVU7Hr1G099700.17 , HORVU7Hr1G099700.14 , HORVU7Hr1G099700.15 , HORVU7Hr1G099700.12 , HORVU7Hr1G099700.13 , HORVU7Hr1G099700.10 , HORVU7Hr1G099700.11 , HORVU7Hr1G099700.48 , HORVU7Hr1G099700.45 , HORVU7Hr1G099700.44 , HORVU7Hr1G099700.47 , HORVU7Hr1G099700.46 , HORVU7Hr1G099700.41 , HORVU7Hr1G099700.40 , HORVU7Hr1G099700.43 , HORVU7Hr1G099700.42 , HORVU7Hr1G099700.8 , HORVU7Hr1G099700.9 , HORVU7Hr1G099700.4 , HORVU7Hr1G099700.5 , HORVU7Hr1G099700.6 , HORVU7Hr1G099700.7 , HORVU7Hr1G099700.1 , HORVU7Hr1G099700.2 , HORVU7Hr1G099700.3
Wheat TraesCS7A02G436200 , TraesCS7A02G436200 , TraesCS7A02G436200 , TraesCS7B02G335900 , TraesCS7B02G335900 , TraesCS7D02G426800 , TraesCS7D02G426800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G154400 MIM, putative, expressed -
2 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
3 Sobic.001G222000 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
5 Sobic.007G039300 ATP-binding region, ATPase-like domain containing protein, expressed -
6 Sobic.007G004000 YL1 nuclear protein C-terminal domain containing protein, expressed K11664: VPS72, TCFL1, vacuolar protein sorting-associated protein 72
7 Sobic.001G355200 tRNA pseudouridine synthase family protein, putative, expressed K01855: PUS3, tRNA pseudouridine38/39 synthase
8 Sobic.002G263700 bromodomain protein 103, putative, expressed -
9 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
10 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
11 Sobic.002G239601 - -
12 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
13 Sobic.004G020900 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
14 Sobic.007G000300 expressed protein -
15 Sobic.003G074200 actin, putative, expressed K11672: ACTR5, ARP5, actin-related protein 5
16 Sobic.010G130100 BAH domain containing protein, expressed -
17 Sobic.010G233000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
18 Sobic.005G191700 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
19 Sobic.010G114900 expressed protein -
20 Sobic.002G254800 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III


Gene co-expression network
sample Sobic010G240800 Sobic010G240800 Sobic002G154400 Sobic002G154400 Sobic010G240800--Sobic002G154400 Sobic008G057000 Sobic008G057000 Sobic010G240800--Sobic008G057000 Sobic001G222000 Sobic001G222000 Sobic010G240800--Sobic001G222000 Sobic009G032200 Sobic009G032200 Sobic010G240800--Sobic009G032200 Sobic007G039300 Sobic007G039300 Sobic010G240800--Sobic007G039300 Sobic007G004000 Sobic007G004000 Sobic010G240800--Sobic007G004000 Sobic001G355200 Sobic001G355200 Sobic010G240800--Sobic001G355200 Sobic002G263700 Sobic002G263700 Sobic010G240800--Sobic002G263700 Sobic007G168300 Sobic007G168300 Sobic010G240800--Sobic007G168300 Sobic009G042100 Sobic009G042100 Sobic002G154400--Sobic009G042100 Sobic002G154400--Sobic007G039300 Sobic007G053700 Sobic007G053700 Sobic002G154400--Sobic007G053700 Sobic003G349000 Sobic003G349000 Sobic002G154400--Sobic003G349000 Sobic002G154400--Sobic010G240800 Sobic004G020900 Sobic004G020900 Sobic002G154400--Sobic004G020900 Sobic002G154400--Sobic009G032200 Sobic008G017900 Sobic008G017900 Sobic002G154400--Sobic008G017900 Sobic009G069200 Sobic009G069200 Sobic002G154400--Sobic009G069200 Sobic003G409200 Sobic003G409200 Sobic008G057000--Sobic003G409200 Sobic005G200800 Sobic005G200800 Sobic008G057000--Sobic005G200800 Sobic001G346900 Sobic001G346900 Sobic008G057000--Sobic001G346900 Sobic004G086200 Sobic004G086200 Sobic008G057000--Sobic004G086200 Sobic002G148400 Sobic002G148400 Sobic008G057000--Sobic002G148400 Sobic010G279900 Sobic010G279900 Sobic008G057000--Sobic010G279900 Sobic001G484200 Sobic001G484200 Sobic008G057000--Sobic001G484200 Sobic008G057000--Sobic009G032200 Sobic007G183300 Sobic007G183300 Sobic008G057000--Sobic007G183300 Sobic001G373000 Sobic001G373000 Sobic001G222000--Sobic001G373000 Sobic001G135500 Sobic001G135500 Sobic001G222000--Sobic001G135500 Sobic001G023800 Sobic001G023800 Sobic001G222000--Sobic001G023800 Sobic001G393700 Sobic001G393700 Sobic001G222000--Sobic001G393700 Sobic001G222000--Sobic007G168300 Sobic001G222000--Sobic008G057000 Sobic003G074200 Sobic003G074200 Sobic001G222000--Sobic003G074200 Sobic001G222000--Sobic001G355200 Sobic001G222000--Sobic009G032200 Sobic010G236200 Sobic010G236200 Sobic009G032200--Sobic010G236200 Sobic010G233000 Sobic010G233000 Sobic009G032200--Sobic010G233000 Sobic010G269300 Sobic010G269300 Sobic009G032200--Sobic010G269300 Sobic004G043750 Sobic004G043750 Sobic009G032200--Sobic004G043750 Sobic009G032200--Sobic008G057000 Sobic009G257500 Sobic009G257500 Sobic009G032200--Sobic009G257500 Sobic003G221500 Sobic003G221500 Sobic009G032200--Sobic003G221500 Sobic010G215900 Sobic010G215900 Sobic009G032200--Sobic010G215900 Sobic009G032200--Sobic001G135500 Sobic007G039300--Sobic004G020900 Sobic007G039300--Sobic008G017900 Sobic007G039300--Sobic002G154400 Sobic007G039300--Sobic002G263700 Sobic004G350200 Sobic004G350200 Sobic007G039300--Sobic004G350200 Sobic003G124600 Sobic003G124600 Sobic007G039300--Sobic003G124600 Sobic007G039300--Sobic010G269300 Sobic003G113300 Sobic003G113300 Sobic007G039300--Sobic003G113300 Sobic003G130900 Sobic003G130900 Sobic007G039300--Sobic003G130900 Sobic004G049700 Sobic004G049700 Sobic007G004000--Sobic004G049700 Sobic002G127100 Sobic002G127100 Sobic007G004000--Sobic002G127100 Sobic006G161000 Sobic006G161000 Sobic007G004000--Sobic006G161000 Sobic002G388500 Sobic002G388500 Sobic007G004000--Sobic002G388500 Sobic007G009700 Sobic007G009700 Sobic007G004000--Sobic007G009700 Sobic007G004000--Sobic007G168300 Sobic006G251900 Sobic006G251900 Sobic007G004000--Sobic006G251900 Sobic010G130100 Sobic010G130100 Sobic007G004000--Sobic010G130100 Sobic003G114500 Sobic003G114500 Sobic007G004000--Sobic003G114500 Sobic001G393900 Sobic001G393900 Sobic001G355200--Sobic001G393900 Sobic004G340400 Sobic004G340400 Sobic001G355200--Sobic004G340400 Sobic001G052400 Sobic001G052400 Sobic001G355200--Sobic001G052400 Sobic004G320500 Sobic004G320500 Sobic001G355200--Sobic004G320500 Sobic001G355200--Sobic001G346900 Sobic001G355200--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic001G355200--Sobic009G119000 Sobic003G188400 Sobic003G188400 Sobic001G355200--Sobic003G188400 Sobic008G014500 Sobic008G014500 Sobic001G355200--Sobic008G014500 Sobic002G263700--Sobic010G269300 Sobic004G141800 Sobic004G141800 Sobic002G263700--Sobic004G141800 Sobic004G285000 Sobic004G285000 Sobic002G263700--Sobic004G285000 Sobic004G111000 Sobic004G111000 Sobic002G263700--Sobic004G111000 Sobic002G063900 Sobic002G063900 Sobic002G263700--Sobic002G063900 Sobic006G280100 Sobic006G280100 Sobic002G263700--Sobic006G280100 Sobic006G245900 Sobic006G245900 Sobic002G263700--Sobic006G245900 Sobic003G016500 Sobic003G016500 Sobic002G263700--Sobic003G016500 Sobic004G309900 Sobic004G309900 Sobic002G263700--Sobic004G309900 Sobic003G042400 Sobic003G042400 Sobic007G168300--Sobic003G042400 Sobic007G168300--Sobic005G200800 Sobic010G001100 Sobic010G001100 Sobic007G168300--Sobic010G001100 Sobic002G154000 Sobic002G154000 Sobic007G168300--Sobic002G154000 Sobic009G126300 Sobic009G126300 Sobic007G168300--Sobic009G126300 Sobic007G168300--Sobic007G183300 Sobic001G453000 Sobic001G453000 Sobic007G168300--Sobic001G453000 Sobic001G376900 Sobic001G376900 Sobic007G168300--Sobic001G376900 Sobic005G200900 Sobic005G200900 Sobic007G168300--Sobic005G200900
Octagon: transcription factors


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