Gene annotation
Transcriptome id Sobic.003G206600.1
Synonym Sb03g026810
Functional annotation glycine-rich protein, putative, expressed
UniProt C5XPM3
Pfam PF09405
Panther DB PTHR22814 PTHR22814:SF97
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80000 : CASC3/Barentsz eIF4AIII binding
RAP-DB (Rice) LOC_Os01g41190.1 : glycine-rich protein, putative, expressed
MaizeGDB (Corn) Zm00025a038445 , Zm00025a028606
Brachypodium KQK08564 , KQK08563
Barley HORVU3Hr1G052070.18 , HORVU3Hr1G052070.13 , HORVU3Hr1G052070.12 , HORVU3Hr1G052070.11 , HORVU3Hr1G052070.16 , HORVU3Hr1G052070.15 , HORVU3Hr1G052070.14 , HORVU3Hr1G052070.17 , HORVU3Hr1G052070.9 , HORVU3Hr1G052070.8 , HORVU3Hr1G052070.2 , HORVU3Hr1G052070.7 , HORVU3Hr1G052070.5 , HORVU3Hr1G052070.4
Wheat TraesCS3A02G213600 , TraesCS3D02G216000 , TraesCS3B02G244300 , TraesCS3B02G244300
Populus PNT43837 , PNT43835 , PNT43836 , PNT43832 , PNT43833 , PNT43834 , PNT43838


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G009800 VIP4, putative, expressed K15177: RNA polymerase-associated protein LEO1
2 Sobic.009G069200 glycine-rich protein, putative, expressed -
3 Sobic.004G160700 TUDOR protein with multiple SNc domains, putative, expressed K15979: staphylococcal nuclease domain-containing protein 1
4 Sobic.009G042100 MA3 domain containing protein, expressed K17583: nucleolar MIF4G domain-containing protein 1
5 Sobic.002G029100 GYF domain containing protein, putative, expressed -
6 Sobic.008G017900 expressed protein -
7 Sobic.002G154400 MIM, putative, expressed -
8 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
9 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
10 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
11 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
12 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
13 Sobic.006G120200 Rf1, mitochondrial precursor, putative, expressed -
14 Sobic.006G141600 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
15 Sobic.005G050600 protein of unknown function domain containing protein, expressed -
16 Sobic.003G038100 glutaminyl-tRNA synthetase, putative, expressed K01886: QARS, glutaminyl-tRNA synthetase
17 Sobic.002G263700 bromodomain protein 103, putative, expressed -
18 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
19 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.003G284700 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase


Gene co-expression network
sample Sobic003G206600 Sobic003G206600 Sobic002G009800 Sobic002G009800 Sobic003G206600--Sobic002G009800 Sobic009G069200 Sobic009G069200 Sobic003G206600--Sobic009G069200 Sobic004G160700 Sobic004G160700 Sobic003G206600--Sobic004G160700 Sobic009G042100 Sobic009G042100 Sobic003G206600--Sobic009G042100 Sobic002G029100 Sobic002G029100 Sobic003G206600--Sobic002G029100 Sobic008G017900 Sobic008G017900 Sobic003G206600--Sobic008G017900 Sobic002G154400 Sobic002G154400 Sobic003G206600--Sobic002G154400 Sobic010G077500 Sobic010G077500 Sobic003G206600--Sobic010G077500 Sobic001G135500 Sobic001G135500 Sobic003G206600--Sobic001G135500 Sobic002G009800--Sobic003G206600 Sobic003G138900 Sobic003G138900 Sobic002G009800--Sobic003G138900 Sobic002G388500 Sobic002G388500 Sobic002G009800--Sobic002G388500 Sobic009G182600 Sobic009G182600 Sobic002G009800--Sobic009G182600 Sobic007G053700 Sobic007G053700 Sobic002G009800--Sobic007G053700 Sobic009G126300 Sobic009G126300 Sobic002G009800--Sobic009G126300 Sobic007G004000 Sobic007G004000 Sobic002G009800--Sobic007G004000 Sobic009G105800 Sobic009G105800 Sobic002G009800--Sobic009G105800 Sobic002G009800--Sobic008G017900 Sobic009G113100 Sobic009G113100 Sobic009G069200--Sobic009G113100 Sobic003G415100 Sobic003G415100 Sobic009G069200--Sobic003G415100 Sobic010G038900 Sobic010G038900 Sobic009G069200--Sobic010G038900 Sobic002G390400 Sobic002G390400 Sobic009G069200--Sobic002G390400 Sobic005G198200 Sobic005G198200 Sobic009G069200--Sobic005G198200 Sobic002G315100 Sobic002G315100 Sobic009G069200--Sobic002G315100 Sobic001G090300 Sobic001G090300 Sobic009G069200--Sobic001G090300 Sobic005G160200 Sobic005G160200 Sobic009G069200--Sobic005G160200 Sobic008G045800 Sobic008G045800 Sobic009G069200--Sobic008G045800 Sobic005G197100 Sobic005G197100 Sobic004G160700--Sobic005G197100 Sobic003G004500 Sobic003G004500 Sobic004G160700--Sobic003G004500 Sobic007G018200 Sobic007G018200 Sobic004G160700--Sobic007G018200 Sobic009G166600 Sobic009G166600 Sobic004G160700--Sobic009G166600 Sobic005G114800 Sobic005G114800 Sobic004G160700--Sobic005G114800 Sobic001G524000 Sobic001G524000 Sobic004G160700--Sobic001G524000 Sobic008G160500 Sobic008G160500 Sobic004G160700--Sobic008G160500 Sobic002G322400 Sobic002G322400 Sobic004G160700--Sobic002G322400 Sobic006G257600 Sobic006G257600 Sobic004G160700--Sobic006G257600 Sobic001G206500 Sobic001G206500 Sobic009G042100--Sobic001G206500 Sobic009G042100--Sobic002G154400 Sobic009G042100--Sobic003G206600 Sobic009G042100--Sobic009G069200 Sobic009G042100--Sobic008G017900 Sobic009G043400 Sobic009G043400 Sobic009G042100--Sobic009G043400 Sobic003G349000 Sobic003G349000 Sobic009G042100--Sobic003G349000 Sobic002G312800 Sobic002G312800 Sobic009G042100--Sobic002G312800 Sobic010G240800 Sobic010G240800 Sobic009G042100--Sobic010G240800 Sobic004G311400 Sobic004G311400 Sobic002G029100--Sobic004G311400 Sobic003G214600 Sobic003G214600 Sobic002G029100--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic002G029100--Sobic005G200800 Sobic009G255600 Sobic009G255600 Sobic002G029100--Sobic009G255600 Sobic007G183300 Sobic007G183300 Sobic002G029100--Sobic007G183300 Sobic002G245000 Sobic002G245000 Sobic002G029100--Sobic002G245000 Sobic010G186600 Sobic010G186600 Sobic002G029100--Sobic010G186600 Sobic002G164200 Sobic002G164200 Sobic002G029100--Sobic002G164200 Sobic008G002300 Sobic008G002300 Sobic002G029100--Sobic008G002300 Sobic004G020900 Sobic004G020900 Sobic008G017900--Sobic004G020900 Sobic002G180900 Sobic002G180900 Sobic008G017900--Sobic002G180900 Sobic007G039300 Sobic007G039300 Sobic008G017900--Sobic007G039300 Sobic009G190200 Sobic009G190200 Sobic008G017900--Sobic009G190200 Sobic002G263700 Sobic002G263700 Sobic008G017900--Sobic002G263700 Sobic008G017900--Sobic009G069200 Sobic008G017900--Sobic002G154400 Sobic006G191200 Sobic006G191200 Sobic008G017900--Sobic006G191200 Sobic003G124600 Sobic003G124600 Sobic008G017900--Sobic003G124600 Sobic002G154400--Sobic009G042100 Sobic002G154400--Sobic007G039300 Sobic002G154400--Sobic007G053700 Sobic002G154400--Sobic003G349000 Sobic002G154400--Sobic010G240800 Sobic002G154400--Sobic004G020900 Sobic009G032200 Sobic009G032200 Sobic002G154400--Sobic009G032200 Sobic002G154400--Sobic008G017900 Sobic002G154400--Sobic009G069200 Sobic001G042200 Sobic001G042200 Sobic010G077500--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic010G077500--Sobic006G049100 Sobic004G345400 Sobic004G345400 Sobic010G077500--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic010G077500--Sobic007G187600 Sobic003G212900 Sobic003G212900 Sobic010G077500--Sobic003G212900 Sobic008G058800 Sobic008G058800 Sobic010G077500--Sobic008G058800 Sobic007G056500 Sobic007G056500 Sobic010G077500--Sobic007G056500 Sobic002G063900 Sobic002G063900 Sobic010G077500--Sobic002G063900 Sobic009G129600 Sobic009G129600 Sobic010G077500--Sobic009G129600 Sobic001G135500--Sobic003G212900 Sobic001G135500--Sobic010G077500 Sobic001G135500--Sobic002G245000 Sobic001G135500--Sobic007G187600 Sobic001G135500--Sobic002G390400 Sobic008G021000 Sobic008G021000 Sobic001G135500--Sobic008G021000 Sobic009G045200 Sobic009G045200 Sobic001G135500--Sobic009G045200 Sobic001G005600 Sobic001G005600 Sobic001G135500--Sobic001G005600 Sobic001G034500 Sobic001G034500 Sobic001G135500--Sobic001G034500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.