Gene annotation
Transcriptome id Sobic.005G050600.1
Synonym Sb05g004140
Functional annotation protein of unknown function domain containing protein, expressed
UniProt C5Y5J3
Pfam PF01918
Panther DB PTHR13516 PTHR13516:SF9
NCBI CDD KOG2567; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G76010 : Alba DNA/RNA-binding protein
RAP-DB (Rice) LOC_Os11g06760.1 : protein of unknown function domain containing protein, expressed
MaizeGDB (Corn) Zm00025a012902 , Zm00025a029879
Brachypodium KQJ89276
Barley HORVU4Hr1G019990.12 , HORVU4Hr1G019990.2 , HORVU4Hr1G019990.14 , HORVU4Hr1G019990.15 , HORVU4Hr1G019990.17 , HORVU4Hr1G019990.10 , HORVU4Hr1G019990.13 , HORVU4Hr1G019990.18 , HORVU4Hr1G019990.19 , HORVU4Hr1G019990.20 , HORVU4Hr1G019990.8 , HORVU4Hr1G019990.9 , HORVU4Hr1G019990.6 , HORVU4Hr1G019990.7 , HORVU4Hr1G019990.5 , HORVU4Hr1G019990.1
Wheat TraesCS4B02G111400 , TraesCS4D02G109100 , TraesCS4A02G207900
Populus -


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cDNA sequences
Sobic.005G050600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.001G033400 protein kinase domain containing protein, expressed -
3 Sobic.003G412200 inducer of CBF expression 2, putative, expressed -
4 Sobic.001G041400 PAPA-1-like conserved region family protein, expressed -
5 Sobic.007G018700 kinesin motor domain containing protein, putative, expressed -
6 Sobic.005G032400 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
7 Sobic.001G042800 nudix hydrolase homolog 16(PubMedID : 26465154)@nudix hydrolase homolog 16(PubMedID : 26465154)@hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
8 Sobic.010G250900 cadmium/zinc-transporting ATPase, putative, expressed K01534: Zn2+/Cd2+-exporting ATPase
9 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
10 Sobic.009G207500 OsFBX238 - F-box domain containing protein, expressed -
11 Sobic.002G341100 bromodomain domain containing protein, expressed -
12 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
13 Sobic.007G078300 serine/threonine-protein kinase HT1, putative, expressed -
14 Sobic.010G207400 protein kinase domain containing protein, expressed -
15 Sobic.003G230500 "Sh2(Ortholog in maize:Jiang et al., 2013a)"(PubMedID : 31659869)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
16 Sobic.003G425600 - -
17 Sobic.003G035500 hexokinase, putative, expressed K00844: hexokinase
18 Sobic.004G200400 protein kinase domain containing protein, expressed -
19 Sobic.004G160700 TUDOR protein with multiple SNc domains, putative, expressed K15979: staphylococcal nuclease domain-containing protein 1
20 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme


Gene co-expression network
sample Sobic005G050600 Sobic005G050600 Sobic003G004500 Sobic003G004500 Sobic005G050600--Sobic003G004500 Sobic001G033400 Sobic001G033400 Sobic005G050600--Sobic001G033400 Sobic003G412200 Sobic003G412200 Sobic005G050600--Sobic003G412200 Sobic001G041400 Sobic001G041400 Sobic005G050600--Sobic001G041400 Sobic007G018700 Sobic007G018700 Sobic005G050600--Sobic007G018700 Sobic005G032400 Sobic005G032400 Sobic005G050600--Sobic005G032400 Sobic001G042800 Sobic001G042800 Sobic005G050600--Sobic001G042800 Sobic010G250900 Sobic010G250900 Sobic005G050600--Sobic010G250900 Sobic008G160500 Sobic008G160500 Sobic005G050600--Sobic008G160500 Sobic003G004500--Sobic010G250900 Sobic003G004500--Sobic005G050600 Sobic008G064250 Sobic008G064250 Sobic003G004500--Sobic008G064250 Sobic003G425600 Sobic003G425600 Sobic003G004500--Sobic003G425600 Sobic005G083160 Sobic005G083160 Sobic003G004500--Sobic005G083160 Sobic003G004500--Sobic005G032400 Sobic010G107300 Sobic010G107300 Sobic003G004500--Sobic010G107300 Sobic001G233900 Sobic001G233900 Sobic003G004500--Sobic001G233900 Sobic007G018200 Sobic007G018200 Sobic003G004500--Sobic007G018200 Sobic003G035500 Sobic003G035500 Sobic001G033400--Sobic003G035500 Sobic002G341100 Sobic002G341100 Sobic001G033400--Sobic002G341100 Sobic010G207400 Sobic010G207400 Sobic001G033400--Sobic010G207400 Sobic001G033400--Sobic001G041400 Sobic007G078300 Sobic007G078300 Sobic001G033400--Sobic007G078300 Sobic001G033400--Sobic003G004500 Sobic010G189100 Sobic010G189100 Sobic001G033400--Sobic010G189100 Sobic001G033400--Sobic005G050600 Sobic002G403200 Sobic002G403200 Sobic001G033400--Sobic002G403200 Sobic003G230500 Sobic003G230500 Sobic003G412200--Sobic003G230500 Sobic007G147300 Sobic007G147300 Sobic003G412200--Sobic007G147300 Sobic007G122932 Sobic007G122932 Sobic003G412200--Sobic007G122932 Sobic009G021300 Sobic009G021300 Sobic003G412200--Sobic009G021300 Sobic008G001700 Sobic008G001700 Sobic003G412200--Sobic008G001700 Sobic008G071900 Sobic008G071900 Sobic003G412200--Sobic008G071900 Sobic007G123000 Sobic007G123000 Sobic003G412200--Sobic007G123000 Sobic005G001500 Sobic005G001500 Sobic003G412200--Sobic005G001500 Sobic009G086800 Sobic009G086800 Sobic003G412200--Sobic009G086800 Sobic001G041400--Sobic007G078300 Sobic001G041400--Sobic002G341100 Sobic001G041400--Sobic001G033400 Sobic001G041400--Sobic001G042800 Sobic003G022200 Sobic003G022200 Sobic001G041400--Sobic003G022200 Sobic004G329800 Sobic004G329800 Sobic001G041400--Sobic004G329800 Sobic001G041400--Sobic003G035500 Sobic010G152200 Sobic010G152200 Sobic001G041400--Sobic010G152200 Sobic002G067800 Sobic002G067800 Sobic001G041400--Sobic002G067800 Sobic008G156200 Sobic008G156200 Sobic007G018700--Sobic008G156200 Sobic007G018700--Sobic005G050600 Sobic002G390400 Sobic002G390400 Sobic007G018700--Sobic002G390400 Sobic007G018700--Sobic010G207400 Sobic005G072400 Sobic005G072400 Sobic007G018700--Sobic005G072400 Sobic006G061100 Sobic006G061100 Sobic007G018700--Sobic006G061100 Sobic007G018700--Sobic003G412200 Sobic004G200400 Sobic004G200400 Sobic007G018700--Sobic004G200400 Sobic005G131800 Sobic005G131800 Sobic007G018700--Sobic005G131800 Sobic005G032400--Sobic003G004500 Sobic010G262900 Sobic010G262900 Sobic005G032400--Sobic010G262900 Sobic003G415100 Sobic003G415100 Sobic005G032400--Sobic003G415100 Sobic001G053700 Sobic001G053700 Sobic005G032400--Sobic001G053700 Sobic005G032400--Sobic002G403200 Sobic005G032400--Sobic005G050600 Sobic009G156200 Sobic009G156200 Sobic005G032400--Sobic009G156200 Sobic010G180200 Sobic010G180200 Sobic005G032400--Sobic010G180200 Sobic008G045800 Sobic008G045800 Sobic005G032400--Sobic008G045800 Sobic002G127700 Sobic002G127700 Sobic001G042800--Sobic002G127700 Sobic002G291132 Sobic002G291132 Sobic001G042800--Sobic002G291132 Sobic009G061800 Sobic009G061800 Sobic001G042800--Sobic009G061800 Sobic001G042800--Sobic009G086800 Sobic001G259300 Sobic001G259300 Sobic001G042800--Sobic001G259300 Sobic003G350900 Sobic003G350900 Sobic001G042800--Sobic003G350900 Sobic005G188000 Sobic005G188000 Sobic001G042800--Sobic005G188000 Sobic009G022700 Sobic009G022700 Sobic001G042800--Sobic009G022700 Sobic002G211501 Sobic002G211501 Sobic001G042800--Sobic002G211501 Sobic010G250900--Sobic003G004500 Sobic010G250900--Sobic004G329800 Sobic004G037300 Sobic004G037300 Sobic010G250900--Sobic004G037300 Sobic010G250900--Sobic008G064250 Sobic010G250900--Sobic005G083160 Sobic001G367700 Sobic001G367700 Sobic010G250900--Sobic001G367700 Sobic010G250900--Sobic010G107300 Sobic002G360900 Sobic002G360900 Sobic010G250900--Sobic002G360900 Sobic010G250900--Sobic001G233900 Sobic003G062400 Sobic003G062400 Sobic008G160500--Sobic003G062400 Sobic001G005600 Sobic001G005600 Sobic008G160500--Sobic001G005600 Sobic009G030400 Sobic009G030400 Sobic008G160500--Sobic009G030400 Sobic006G120800 Sobic006G120800 Sobic008G160500--Sobic006G120800 Sobic002G359900 Sobic002G359900 Sobic008G160500--Sobic002G359900 Sobic008G160500--Sobic002G403200 Sobic008G160500--Sobic003G004500 Sobic009G258400 Sobic009G258400 Sobic008G160500--Sobic009G258400 Sobic008G160500--Sobic001G033400
Octagon: transcription factors


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