Gene annotation
Transcriptome id Sobic.010G250900.3
Synonym ATHMA2, Sb10g028920, HMA2
Functional annotation cadmium/zinc-transporting ATPase, putative, expressed
UniProt C5Z8W8
Pfam PF12710 PF00122
Panther DB PTHR24093 PTHR24093:SF318
NCBI CDD -
KEGG Orthology K01534; Zn2+/Cd2+-exporting ATPase
Gene Ontology GO:0000166; nucleotide binding


Orthologs (automatic annotation)
TAIR AT4G30110 : heavy metal atpase 2
RAP-DB (Rice) LOC_Os07g12900.1 : cadmium/zinc-transporting ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a018355
Brachypodium KQK17390
Barley HORVU7Hr1G097240.3 , HORVU7Hr1G097240.7 , HORVU7Hr1G097240.6 , HORVU7Hr1G097240.5 , HORVU7Hr1G097240.4 , HORVU7Hr1G097240.1 , HORVU7Hr1G097210.18 , HORVU7Hr1G097210.19 , HORVU7Hr1G097210.16 , HORVU7Hr1G097210.17 , HORVU7Hr1G097210.14 , HORVU7Hr1G097210.15 , HORVU7Hr1G097210.12 , HORVU7Hr1G097210.13 , HORVU7Hr1G097210.10 , HORVU7Hr1G097210.11 , HORVU7Hr1G097210.8 , HORVU7Hr1G097210.6 , HORVU7Hr1G097210.7 , HORVU7Hr1G097210.4 , HORVU7Hr1G097210.5 , HORVU7Hr1G097210.2 , HORVU7Hr1G097210.3 , HORVU7Hr1G097210.27 , HORVU7Hr1G097210.26 , HORVU7Hr1G097210.25 , HORVU7Hr1G097210.24 , HORVU7Hr1G097210.23 , HORVU7Hr1G097210.22 , HORVU7Hr1G097210.21 , HORVU7Hr1G097210.20 , HORVU7Hr1G097210.29 , HORVU7Hr1G097210.28 , HORVU7Hr1G097240.2 , HORVU7Hr1G097210.30
Wheat TraesCS7B02G320100 , TraesCS7B02G320100 , TraesCS7B02G320100 , TraesCS7B02G320100 , TraesCS7A02G420000 , TraesCS7B02G320900 , TraesCS7D02G412400 , TraesCS7D02G412400 , TraesCS7D02G412400 , TraesCS7D02G412400 , TraesCS7A02G419500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G250900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.004G329800 BHLH transcription factor, putative, expressed -
3 Sobic.004G037300 cycloartenol synthase, putative, expressed -
4 Sobic.008G064250 - -
5 Sobic.005G083160 - -
6 Sobic.001G367700 rhythmically expressed gene 2 protein, putative, expressed -
7 Sobic.010G107300 - -
8 Sobic.002G360900 GASR9 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
9 Sobic.001G233900 expressed protein -
10 Sobic.008G088881 - -
11 Sobic.003G342000 bet v I allergen family protein, putative, expressed K14496: abscisic acid receptor PYR/PYL family
12 Sobic.001G196700 OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
13 Sobic.002G016250 - -
14 Sobic.003G101200 paired amphipathic helix repeat-containing protein, putative, expressed -
15 Sobic.005G226150 - -
16 Sobic.001G053700 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
17 Sobic.009G218100 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
18 Sobic.003G242200 Up-reguralion under drought(PubMedID : 24916767)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
19 Sobic.003G323000 - -
20 Sobic.001G394100 - -


Gene co-expression network
sample Sobic010G250900 Sobic010G250900 Sobic003G004500 Sobic003G004500 Sobic010G250900--Sobic003G004500 Sobic004G329800 Sobic004G329800 Sobic010G250900--Sobic004G329800 Sobic004G037300 Sobic004G037300 Sobic010G250900--Sobic004G037300 Sobic008G064250 Sobic008G064250 Sobic010G250900--Sobic008G064250 Sobic005G083160 Sobic005G083160 Sobic010G250900--Sobic005G083160 Sobic001G367700 Sobic001G367700 Sobic010G250900--Sobic001G367700 Sobic010G107300 Sobic010G107300 Sobic010G250900--Sobic010G107300 Sobic002G360900 Sobic002G360900 Sobic010G250900--Sobic002G360900 Sobic001G233900 Sobic001G233900 Sobic010G250900--Sobic001G233900 Sobic003G004500--Sobic010G250900 Sobic005G050600 Sobic005G050600 Sobic003G004500--Sobic005G050600 Sobic003G004500--Sobic008G064250 Sobic003G425600 Sobic003G425600 Sobic003G004500--Sobic003G425600 Sobic003G004500--Sobic005G083160 Sobic005G032400 Sobic005G032400 Sobic003G004500--Sobic005G032400 Sobic003G004500--Sobic010G107300 Sobic003G004500--Sobic001G233900 Sobic007G018200 Sobic007G018200 Sobic003G004500--Sobic007G018200 Sobic003G389400 Sobic003G389400 Sobic004G329800--Sobic003G389400 Sobic010G152200 Sobic010G152200 Sobic004G329800--Sobic010G152200 Sobic009G009900 Sobic009G009900 Sobic004G329800--Sobic009G009900 Sobic005G140300 Sobic005G140300 Sobic004G329800--Sobic005G140300 Sobic006G034275 Sobic006G034275 Sobic004G329800--Sobic006G034275 Sobic010G142300 Sobic010G142300 Sobic004G329800--Sobic010G142300 Sobic005G199300 Sobic005G199300 Sobic004G329800--Sobic005G199300 Sobic001G394100 Sobic001G394100 Sobic004G329800--Sobic001G394100 Sobic005G223200 Sobic005G223200 Sobic004G329800--Sobic005G223200 Sobic003G342000 Sobic003G342000 Sobic004G037300--Sobic003G342000 Sobic010G164100 Sobic010G164100 Sobic004G037300--Sobic010G164100 Sobic007G075301 Sobic007G075301 Sobic004G037300--Sobic007G075301 Sobic004G037300--Sobic003G389400 Sobic004G037300--Sobic008G064250 Sobic002G016250 Sobic002G016250 Sobic004G037300--Sobic002G016250 Sobic004G037300--Sobic001G233900 Sobic003G242200 Sobic003G242200 Sobic004G037300--Sobic003G242200 Sobic004G037300--Sobic005G140300 Sobic008G064250--Sobic002G016250 Sobic005G165632 Sobic005G165632 Sobic008G064250--Sobic005G165632 Sobic008G064250--Sobic003G342000 Sobic009G218100 Sobic009G218100 Sobic008G064250--Sobic009G218100 Sobic008G113350 Sobic008G113350 Sobic008G064250--Sobic008G113350 Sobic008G064250--Sobic004G037300 Sobic008G064250--Sobic005G083160 Sobic008G064250--Sobic001G233900 Sobic008G064250--Sobic010G107300 Sobic005G083160--Sobic010G107300 Sobic005G226150 Sobic005G226150 Sobic005G083160--Sobic005G226150 Sobic010G022600 Sobic010G022600 Sobic005G083160--Sobic010G022600 Sobic008G088881 Sobic008G088881 Sobic005G083160--Sobic008G088881 Sobic005G083160--Sobic009G218100 Sobic005G083160--Sobic002G360900 Sobic005G083160--Sobic001G233900 Sobic003G101200 Sobic003G101200 Sobic005G083160--Sobic003G101200 Sobic003G323000 Sobic003G323000 Sobic005G083160--Sobic003G323000 Sobic001G196700 Sobic001G196700 Sobic001G367700--Sobic001G196700 Sobic001G367700--Sobic003G242200 Sobic005G110445 Sobic005G110445 Sobic001G367700--Sobic005G110445 Sobic001G367700--Sobic001G394100 Sobic001G367700--Sobic005G199300 Sobic003G392500 Sobic003G392500 Sobic001G367700--Sobic003G392500 Sobic009G010000 Sobic009G010000 Sobic001G367700--Sobic009G010000 Sobic009G013400 Sobic009G013400 Sobic001G367700--Sobic009G013400 Sobic001G367700--Sobic010G142300 Sobic010G107300--Sobic005G083160 Sobic010G107300--Sobic005G226150 Sobic010G107300--Sobic010G022600 Sobic010G107300--Sobic008G088881 Sobic010G107300--Sobic002G360900 Sobic010G107300--Sobic001G233900 Sobic003G247700 Sobic003G247700 Sobic010G107300--Sobic003G247700 Sobic010G107300--Sobic003G323000 Sobic007G070700 Sobic007G070700 Sobic010G107300--Sobic007G070700 Sobic002G360900--Sobic008G088881 Sobic002G360900--Sobic010G107300 Sobic002G360900--Sobic005G083160 Sobic002G360900--Sobic001G233900 Sobic002G360900--Sobic005G226150 Sobic002G360900--Sobic010G022600 Sobic001G324800 Sobic001G324800 Sobic002G360900--Sobic001G324800 Sobic002G360900--Sobic003G323000 Sobic003G303500 Sobic003G303500 Sobic002G360900--Sobic003G303500 Sobic001G233900--Sobic008G088881 Sobic001G233900--Sobic005G226150 Sobic005G225000 Sobic005G225000 Sobic001G233900--Sobic005G225000 Sobic005G199101 Sobic005G199101 Sobic001G233900--Sobic005G199101 Sobic010G153800 Sobic010G153800 Sobic001G233900--Sobic010G153800 Sobic002G091800 Sobic002G091800 Sobic001G233900--Sobic002G091800 Sobic001G233900--Sobic010G107300 Sobic002G344900 Sobic002G344900 Sobic001G233900--Sobic002G344900 Sobic010G148600 Sobic010G148600 Sobic001G233900--Sobic010G148600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.