Gene annotation
Transcriptome id Sobic.004G329800.1
Synonym Sb04g035890, LRL3
Functional annotation BHLH transcription factor, putative, expressed
UniProt C5XUG1
Pfam PF00010
Panther DB PTHR16223:SF42 PTHR16223
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G24260 : LJRHL1-like 1
RAP-DB (Rice) LOC_Os02g55250.1 : BHLH transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a013906 , Zm00025a022466 , Zm00025a049780 , Zm00025a032939
Brachypodium KQK01143 , KQK19280
Barley HORVU7Hr1G030250.12 , HORVU7Hr1G030250.10 , HORVU6Hr1G085500.8 , HORVU6Hr1G085500.9 , HORVU6Hr1G085500.6 , HORVU6Hr1G085500.7 , HORVU6Hr1G085500.4 , HORVU6Hr1G085500.5 , HORVU6Hr1G085500.2 , HORVU6Hr1G085500.3 , HORVU6Hr1G085500.1 , HORVU7Hr1G030250.9 , HORVU7Hr1G030250.7 , HORVU7Hr1G030250.6 , HORVU7Hr1G030250.5 , HORVU7Hr1G030250.4 , HORVU6Hr1G085500.10 , HORVU6Hr1G085500.11 , HORVU6Hr1G085500.12
Wheat TraesCS7D02G149400 , TraesCS6A02G358400 , TraesCS6A02G358400 , TraesCS6A02G358400 , TraesCS6B02G391100 , TraesCS6D02G341200 , TraesCS7A02G147500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G329800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G389400 patatin, putative, expressed -
2 Sobic.010G152200 avr9/Cf-9 rapidly elicited protein 194, putative, expressed -
3 Sobic.009G009900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inhibitor I family protein, putative, expressed -
4 Sobic.005G140300 expressed protein -
5 Sobic.006G034275 - -
6 Sobic.010G142300 - -
7 Sobic.005G199300 expressed protein -
8 Sobic.001G394100 - -
9 Sobic.005G223200 - -
10 Sobic.007G001600 LTPL151 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.009G010000 expressed protein -
12 Sobic.002G274900 harpin-induced protein 1 domain containing protein, expressed -
13 Sobic.003G392500 cytochrome P450, putative, expressed -
14 Sobic.009G010150 - -
15 Sobic.003G226000 polygalacturonase, putative, expressed K01184: polygalacturonase
16 Sobic.005G110000 LTPL151 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.002G143700 alpha-soluble NSF attachment protein, putative, expressed -
18 Sobic.006G154300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@KUN1 - Kunitz-type trypsin inhibitor precursor, expressed -
19 Sobic.002G362400 uncharacterized 50.6 kDa protein in the 5region of gyrA and gyrB, putative, expressed -
20 Sobic.003G101100 no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic004G329800 Sobic004G329800 Sobic003G389400 Sobic003G389400 Sobic004G329800--Sobic003G389400 Sobic010G152200 Sobic010G152200 Sobic004G329800--Sobic010G152200 Sobic009G009900 Sobic009G009900 Sobic004G329800--Sobic009G009900 Sobic005G140300 Sobic005G140300 Sobic004G329800--Sobic005G140300 Sobic006G034275 Sobic006G034275 Sobic004G329800--Sobic006G034275 Sobic010G142300 Sobic010G142300 Sobic004G329800--Sobic010G142300 Sobic005G199300 Sobic005G199300 Sobic004G329800--Sobic005G199300 Sobic001G394100 Sobic001G394100 Sobic004G329800--Sobic001G394100 Sobic005G223200 Sobic005G223200 Sobic004G329800--Sobic005G223200 Sobic005G193100 Sobic005G193100 Sobic003G389400--Sobic005G193100 Sobic005G192801 Sobic005G192801 Sobic003G389400--Sobic005G192801 Sobic001G381250 Sobic001G381250 Sobic003G389400--Sobic001G381250 Sobic010G152200--Sobic003G389400 Sobic010G152200--Sobic009G009900 Sobic002G362400 Sobic002G362400 Sobic010G152200--Sobic002G362400 Sobic005G110000 Sobic005G110000 Sobic010G152200--Sobic005G110000 Sobic003G101100 Sobic003G101100 Sobic010G152200--Sobic003G101100 Sobic010G044600 Sobic010G044600 Sobic010G152200--Sobic010G044600 Sobic003G226000 Sobic003G226000 Sobic010G152200--Sobic003G226000 Sobic010G152200--Sobic005G199300 Sobic010G237100 Sobic010G237100 Sobic010G152200--Sobic010G237100 Sobic009G010000 Sobic009G010000 Sobic009G009900--Sobic009G010000 Sobic003G392500 Sobic003G392500 Sobic009G009900--Sobic003G392500 Sobic007G001600 Sobic007G001600 Sobic009G009900--Sobic007G001600 Sobic004G313800 Sobic004G313800 Sobic009G009900--Sobic004G313800 Sobic009G009900--Sobic005G199300 Sobic006G154300 Sobic006G154300 Sobic009G009900--Sobic006G154300 Sobic006G031600 Sobic006G031600 Sobic009G009900--Sobic006G031600 Sobic009G010150 Sobic009G010150 Sobic009G009900--Sobic009G010150 Sobic009G009900--Sobic010G142300 Sobic005G140300--Sobic006G034275 Sobic005G140300--Sobic010G142300 Sobic005G140300--Sobic005G199300 Sobic005G140300--Sobic005G223200 Sobic005G140300--Sobic009G010000 Sobic005G140300--Sobic007G001600 Sobic005G140300--Sobic005G110000 Sobic005G140300--Sobic003G392500 Sobic002G274900 Sobic002G274900 Sobic005G140300--Sobic002G274900 Sobic006G034275--Sobic005G140300 Sobic006G034275--Sobic010G142300 Sobic006G034275--Sobic005G223200 Sobic006G034275--Sobic009G010000 Sobic006G034275--Sobic003G392500 Sobic006G034275--Sobic005G199300 Sobic006G034275--Sobic007G001600 Sobic006G034275--Sobic009G009900 Sobic006G034275--Sobic002G274900 Sobic010G142300--Sobic006G034275 Sobic010G142300--Sobic005G223200 Sobic010G142300--Sobic003G392500 Sobic010G142300--Sobic005G140300 Sobic010G142300--Sobic009G010000 Sobic010G142300--Sobic006G031600 Sobic010G142300--Sobic009G009900 Sobic010G142300--Sobic005G199300 Sobic010G142300--Sobic007G001600 Sobic005G199300--Sobic007G001600 Sobic005G199300--Sobic003G226000 Sobic005G199300--Sobic002G274900 Sobic005G199300--Sobic009G010000 Sobic002G370300 Sobic002G370300 Sobic005G199300--Sobic002G370300 Sobic005G199300--Sobic009G010150 Sobic005G199300--Sobic002G362400 Sobic005G199300--Sobic006G154300 Sobic005G199300--Sobic003G392500 Sobic002G143700 Sobic002G143700 Sobic001G394100--Sobic002G143700 Sobic001G394100--Sobic010G142300 Sobic001G394100--Sobic006G034275 Sobic002G344900 Sobic002G344900 Sobic001G394100--Sobic002G344900 Sobic001G394100--Sobic003G392500 Sobic001G394100--Sobic005G223200 Sobic001G394100--Sobic005G140300 Sobic001G394100--Sobic009G010000 Sobic001G394100--Sobic006G031600 Sobic005G223200--Sobic010G142300 Sobic005G223200--Sobic004G313800 Sobic005G223200--Sobic006G031600 Sobic005G223200--Sobic006G034275 Sobic007G156300 Sobic007G156300 Sobic005G223200--Sobic007G156300 Sobic005G223200--Sobic003G392500 Sobic005G223200--Sobic009G009900 Sobic005G223200--Sobic009G010000 Sobic005G223200--Sobic006G154300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.