Gene annotation
Transcriptome id Sobic.001G041400.1
Synonym Sb01g003820
Functional annotation PAPA-1-like conserved region family protein, expressed
UniProt C5WW00
Pfam PF04438 PF04795
Panther DB PTHR21561 PTHR21561:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0006338chromatin remodeling


Orthologs (automatic annotation)
TAIR AT2G47350 : HIT zinc finger ;PAPA-1-like conserved region
RAP-DB (Rice) LOC_Os03g59680.1 : PAPA-1-like conserved region family protein, expressed
MaizeGDB (Corn) Zm00025a016476 , Zm00025a008740
Brachypodium PNT73923 , KQK12526
Barley HORVU5Hr1G111360.8 , HORVU5Hr1G111360.3 , HORVU5Hr1G111360.2 , HORVU5Hr1G111360.1 , HORVU5Hr1G111360.7 , HORVU5Hr1G111360.5 , HORVU5Hr1G111360.4 , HORVU5Hr1G111360.9 , HORVU5Hr1G111360.13 , HORVU5Hr1G111360.12 , HORVU5Hr1G111360.11 , HORVU5Hr1G111360.10 , HORVU5Hr1G111360.14
Wheat TraesCS5B02G478400
Populus -


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cDNA sequences
Sobic.001G041400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G078300 serine/threonine-protein kinase HT1, putative, expressed -
2 Sobic.002G341100 bromodomain domain containing protein, expressed -
3 Sobic.001G033400 protein kinase domain containing protein, expressed -
4 Sobic.001G042800 nudix hydrolase homolog 16(PubMedID : 26465154)@nudix hydrolase homolog 16(PubMedID : 26465154)@hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
5 Sobic.003G022200 DUF538 domain containing protein, putative, expressed -
6 Sobic.004G329800 BHLH transcription factor, putative, expressed -
7 Sobic.003G035500 hexokinase, putative, expressed K00844: hexokinase
8 Sobic.010G152200 avr9/Cf-9 rapidly elicited protein 194, putative, expressed -
9 Sobic.002G067800 - -
10 Sobic.005G050600 protein of unknown function domain containing protein, expressed -
11 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
12 Sobic.003G412200 inducer of CBF expression 2, putative, expressed -
13 Sobic.008G013000 expressed protein -
14 Sobic.002G127700 - -
15 Sobic.004G176700 ACT domain containing protein, putative, expressed -
16 Sobic.003G174200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G158300 transcription factor, putative, expressed -
18 Sobic.010G189100 expressed protein -
19 Sobic.007G216900 coiled-coil domain containing 49, putative, expressed -
20 Sobic.010G262900 expressed protein -


Gene co-expression network
sample Sobic001G041400 Sobic001G041400 Sobic007G078300 Sobic007G078300 Sobic001G041400--Sobic007G078300 Sobic002G341100 Sobic002G341100 Sobic001G041400--Sobic002G341100 Sobic001G033400 Sobic001G033400 Sobic001G041400--Sobic001G033400 Sobic001G042800 Sobic001G042800 Sobic001G041400--Sobic001G042800 Sobic003G022200 Sobic003G022200 Sobic001G041400--Sobic003G022200 Sobic004G329800 Sobic004G329800 Sobic001G041400--Sobic004G329800 Sobic003G035500 Sobic003G035500 Sobic001G041400--Sobic003G035500 Sobic010G152200 Sobic010G152200 Sobic001G041400--Sobic010G152200 Sobic002G067800 Sobic002G067800 Sobic001G041400--Sobic002G067800 Sobic008G013000 Sobic008G013000 Sobic007G078300--Sobic008G013000 Sobic007G078300--Sobic010G152200 Sobic009G022700 Sobic009G022700 Sobic007G078300--Sobic009G022700 Sobic003G105600 Sobic003G105600 Sobic007G078300--Sobic003G105600 Sobic009G013400 Sobic009G013400 Sobic007G078300--Sobic009G013400 Sobic002G077600 Sobic002G077600 Sobic007G078300--Sobic002G077600 Sobic009G009900 Sobic009G009900 Sobic007G078300--Sobic009G009900 Sobic002G077500 Sobic002G077500 Sobic007G078300--Sobic002G077500 Sobic001G326000 Sobic001G326000 Sobic007G078300--Sobic001G326000 Sobic002G341100--Sobic001G033400 Sobic002G341100--Sobic001G041400 Sobic006G278200 Sobic006G278200 Sobic002G341100--Sobic006G278200 Sobic002G095700 Sobic002G095700 Sobic002G341100--Sobic002G095700 Sobic002G341100--Sobic002G067800 Sobic002G341100--Sobic003G035500 Sobic008G073000 Sobic008G073000 Sobic002G341100--Sobic008G073000 Sobic004G256200 Sobic004G256200 Sobic002G341100--Sobic004G256200 Sobic006G120400 Sobic006G120400 Sobic002G341100--Sobic006G120400 Sobic001G033400--Sobic003G035500 Sobic001G033400--Sobic002G341100 Sobic010G207400 Sobic010G207400 Sobic001G033400--Sobic010G207400 Sobic001G033400--Sobic001G041400 Sobic001G033400--Sobic007G078300 Sobic003G004500 Sobic003G004500 Sobic001G033400--Sobic003G004500 Sobic010G189100 Sobic010G189100 Sobic001G033400--Sobic010G189100 Sobic005G050600 Sobic005G050600 Sobic001G033400--Sobic005G050600 Sobic002G403200 Sobic002G403200 Sobic001G033400--Sobic002G403200 Sobic002G127700 Sobic002G127700 Sobic001G042800--Sobic002G127700 Sobic002G291132 Sobic002G291132 Sobic001G042800--Sobic002G291132 Sobic009G061800 Sobic009G061800 Sobic001G042800--Sobic009G061800 Sobic009G086800 Sobic009G086800 Sobic001G042800--Sobic009G086800 Sobic001G259300 Sobic001G259300 Sobic001G042800--Sobic001G259300 Sobic003G350900 Sobic003G350900 Sobic001G042800--Sobic003G350900 Sobic005G188000 Sobic005G188000 Sobic001G042800--Sobic005G188000 Sobic001G042800--Sobic009G022700 Sobic002G211501 Sobic002G211501 Sobic001G042800--Sobic002G211501 Sobic003G022200--Sobic010G189100 Sobic001G130700 Sobic001G130700 Sobic003G022200--Sobic001G130700 Sobic003G022200--Sobic007G078300 Sobic003G022200--Sobic003G035500 Sobic003G022200--Sobic001G041400 Sobic002G253600 Sobic002G253600 Sobic003G022200--Sobic002G253600 Sobic002G016900 Sobic002G016900 Sobic003G022200--Sobic002G016900 Sobic003G022200--Sobic006G278200 Sobic003G022200--Sobic001G033400 Sobic003G389400 Sobic003G389400 Sobic004G329800--Sobic003G389400 Sobic004G329800--Sobic010G152200 Sobic004G329800--Sobic009G009900 Sobic005G140300 Sobic005G140300 Sobic004G329800--Sobic005G140300 Sobic006G034275 Sobic006G034275 Sobic004G329800--Sobic006G034275 Sobic010G142300 Sobic010G142300 Sobic004G329800--Sobic010G142300 Sobic005G199300 Sobic005G199300 Sobic004G329800--Sobic005G199300 Sobic001G394100 Sobic001G394100 Sobic004G329800--Sobic001G394100 Sobic005G223200 Sobic005G223200 Sobic004G329800--Sobic005G223200 Sobic003G035500--Sobic001G033400 Sobic008G156200 Sobic008G156200 Sobic003G035500--Sobic008G156200 Sobic003G035500--Sobic007G078300 Sobic003G035500--Sobic010G189100 Sobic002G247300 Sobic002G247300 Sobic003G035500--Sobic002G247300 Sobic003G035500--Sobic010G207400 Sobic003G174200 Sobic003G174200 Sobic003G035500--Sobic003G174200 Sobic003G412200 Sobic003G412200 Sobic003G035500--Sobic003G412200 Sobic007G091200 Sobic007G091200 Sobic003G035500--Sobic007G091200 Sobic010G152200--Sobic003G389400 Sobic010G152200--Sobic009G009900 Sobic002G362400 Sobic002G362400 Sobic010G152200--Sobic002G362400 Sobic005G110000 Sobic005G110000 Sobic010G152200--Sobic005G110000 Sobic003G101100 Sobic003G101100 Sobic010G152200--Sobic003G101100 Sobic010G044600 Sobic010G044600 Sobic010G152200--Sobic010G044600 Sobic003G226000 Sobic003G226000 Sobic010G152200--Sobic003G226000 Sobic010G152200--Sobic005G199300 Sobic010G237100 Sobic010G237100 Sobic010G152200--Sobic010G237100 Sobic010G194700 Sobic010G194700 Sobic002G067800--Sobic010G194700 Sobic008G165100 Sobic008G165100 Sobic002G067800--Sobic008G165100 Sobic005G059100 Sobic005G059100 Sobic002G067800--Sobic005G059100 Sobic002G067800--Sobic002G095700 Sobic002G067800--Sobic008G073000 Sobic002G159200 Sobic002G159200 Sobic002G067800--Sobic002G159200 Sobic003G355000 Sobic003G355000 Sobic002G067800--Sobic003G355000 Sobic007G043500 Sobic007G043500 Sobic002G067800--Sobic007G043500 Sobic006G123900 Sobic006G123900 Sobic002G067800--Sobic006G123900
Octagon: transcription factors


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