Gene annotation
| Transcriptome id | Sobic.004G176700.2,Sobic.004G176700.1,Sobic.004G176700.4,Sobic.004G176700.3 |
|---|---|
| Synonym | ACR3, Sb04g022677 |
| Functional annotation | ACT domain containing protein, putative, expressed |
| UniProt | A0A194YQ94 |
| Pfam | PF01842 |
| Panther DB | PTHR31096 PTHR31096:SF5 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016597; amino acid binding GO:0008152metabolic process |
Orthologs (automatic annotation)
| TAIR | AT1G76990 : ACT domain repeat 3 |
|---|---|
| RAP-DB (Rice) | LOC_Os02g34990.1,LOC_Os02g34990.2 : ACT domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a020651 |
| Brachypodium | PNT68830 , KQJ99879 , KQJ99878 , PNT68829 , KQJ99142 |
| Barley | HORVU6Hr1G059520.11 , HORVU6Hr1G059520.10 , HORVU6Hr1G059520.5 , HORVU6Hr1G059520.4 , HORVU6Hr1G059520.7 , HORVU6Hr1G059520.6 , HORVU6Hr1G059520.1 , HORVU6Hr1G059520.3 , HORVU6Hr1G059520.2 , HORVU6Hr1G059520.9 , HORVU6Hr1G059520.8 , HORVU7Hr1G054610.9 , HORVU7Hr1G054610.8 , HORVU7Hr1G054610.4 , HORVU7Hr1G054610.7 , HORVU7Hr1G054610.6 , HORVU7Hr1G054610.1 , HORVU7Hr1G054610.3 , HORVU7Hr1G054610.2 |
| Wheat | TraesCS6D02G214800 , TraesCS6D02G214800 , TraesCS6A02G220400 , TraesCS6A02G220400 , TraesCS7B02G159600 , TraesCS7A02G261700 , TraesCS7D02G262700 , TraesCS6B02G261900 |
| Populus | PNT23966 , PNT23965 |
JBrowse
| Sobic.004G176700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G001700 | Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed | - |
| 2 | Sobic.009G086800 | no apical meristem protein, putative, expressed | - |
| 3 | Sobic.004G171500 | basic helix-loop-helix, putative, expressed | - |
| 4 | Sobic.001G362900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 71D7, putative, expressed | - |
| 5 | Sobic.004G116200 | expressed protein | - |
| 6 | Sobic.002G088000 | cytokinin-N-glucosyltransferase 1, putative, expressed | - |
| 7 | Sobic.007G147300 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | K09286: EREBP-like factor |
| 8 | Sobic.004G085100 | mitochondrial carrier protein, putative, expressed | - |
| 9 | Sobic.008G071900 | tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | K08066: NFYC, nuclear transcription factor Y, gamma |
| 10 | Sobic.005G188000 | no apical meristem protein, putative, expressed | - |
| 11 | Sobic.009G021300 | Jacalin-like lectin domain containing protein, putative, expressed | - |
| 12 | Sobic.003G350900 | homeobox domain containing protein, expressed | - |
| 13 | Sobic.010G102900 | protein of unknown function DUF1675 domain containing protein, expressed | - |
| 14 | Sobic.001G037800 | cinnamoyl CoA reductase, putative, expressed | - |
| 15 | Sobic.002G417900 | nucleotidyltransferase, putative, expressed | - |
| 16 | Sobic.009G061800 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed | - |
| 17 | Sobic.008G064000 | LTPL36 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 18 | Sobic.007G123000 | sex determination protein tasselseed-2, putative, expressed | - |
| 19 | Sobic.003G156100 | OsFBX117 - F-box domain containing protein, expressed | - |
| 20 | Sobic.009G116500 | esterase, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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