Gene annotation
Transcriptome id Sobic.004G171500.1
Synonym RGE1, Sb04g022260, ZOU
Functional annotation basic helix-loop-helix, putative, expressed
UniProt C5XU50
Pfam PF00010
Panther DB PTHR11514 PTHR11514:SF57
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G49770 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os04g35010.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.004G171500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G362900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 71D7, putative, expressed -
2 Sobic.008G071900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
3 Sobic.008G001700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
4 Sobic.004G085100 mitochondrial carrier protein, putative, expressed -
5 Sobic.004G116200 expressed protein -
6 Sobic.010G102900 protein of unknown function DUF1675 domain containing protein, expressed -
7 Sobic.002G088000 cytokinin-N-glucosyltransferase 1, putative, expressed -
8 Sobic.002G417900 nucleotidyltransferase, putative, expressed -
9 Sobic.009G116500 esterase, putative, expressed -
10 Sobic.007G034900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450, putative, expressed -
11 Sobic.001G142600 OsFBX103 - F-box domain containing protein, expressed -
12 Sobic.003G227800 cytochrome P450 72A1, putative, expressed -
13 Sobic.009G021300 Jacalin-like lectin domain containing protein, putative, expressed -
14 Sobic.001G037800 cinnamoyl CoA reductase, putative, expressed -
15 Sobic.001G297800 expressed protein -
16 Sobic.003G156100 OsFBX117 - F-box domain containing protein, expressed -
17 Sobic.002G053100 RNA recognition motif containing protein, expressed -
18 Sobic.005G188000 no apical meristem protein, putative, expressed -
19 Sobic.008G176600 expressed protein -
20 Sobic.006G104800 dnaJ domain containing protein, expressed -


Gene co-expression network
sample Sobic004G171500 Sobic004G171500 Sobic001G362900 Sobic001G362900 Sobic004G171500--Sobic001G362900 Sobic008G071900 Sobic008G071900 Sobic004G171500--Sobic008G071900 Sobic008G001700 Sobic008G001700 Sobic004G171500--Sobic008G001700 Sobic004G085100 Sobic004G085100 Sobic004G171500--Sobic004G085100 Sobic004G116200 Sobic004G116200 Sobic004G171500--Sobic004G116200 Sobic010G102900 Sobic010G102900 Sobic004G171500--Sobic010G102900 Sobic002G088000 Sobic002G088000 Sobic004G171500--Sobic002G088000 Sobic002G417900 Sobic002G417900 Sobic004G171500--Sobic002G417900 Sobic009G116500 Sobic009G116500 Sobic004G171500--Sobic009G116500 Sobic001G362900--Sobic004G085100 Sobic001G362900--Sobic004G171500 Sobic001G362900--Sobic002G088000 Sobic001G362900--Sobic008G001700 Sobic001G362900--Sobic008G071900 Sobic001G362900--Sobic004G116200 Sobic001G362900--Sobic002G417900 Sobic001G362900--Sobic009G116500 Sobic001G297800 Sobic001G297800 Sobic001G362900--Sobic001G297800 Sobic008G071900--Sobic010G102900 Sobic008G071900--Sobic004G171500 Sobic008G071900--Sobic008G001700 Sobic003G227800 Sobic003G227800 Sobic008G071900--Sobic003G227800 Sobic008G071900--Sobic001G362900 Sobic001G142600 Sobic001G142600 Sobic008G071900--Sobic001G142600 Sobic009G021300 Sobic009G021300 Sobic008G071900--Sobic009G021300 Sobic008G071900--Sobic004G085100 Sobic005G001500 Sobic005G001500 Sobic008G071900--Sobic005G001500 Sobic008G001700--Sobic004G171500 Sobic008G001700--Sobic008G071900 Sobic008G001700--Sobic001G362900 Sobic008G001700--Sobic004G116200 Sobic008G001700--Sobic009G021300 Sobic008G001700--Sobic004G085100 Sobic008G001700--Sobic010G102900 Sobic007G147300 Sobic007G147300 Sobic008G001700--Sobic007G147300 Sobic008G001700--Sobic002G088000 Sobic004G085100--Sobic001G362900 Sobic004G085100--Sobic002G088000 Sobic004G085100--Sobic004G171500 Sobic004G085100--Sobic004G116200 Sobic004G085100--Sobic002G417900 Sobic004G085100--Sobic008G001700 Sobic004G085100--Sobic008G071900 Sobic005G188000 Sobic005G188000 Sobic004G085100--Sobic005G188000 Sobic003G156100 Sobic003G156100 Sobic004G085100--Sobic003G156100 Sobic004G116200--Sobic002G088000 Sobic004G116200--Sobic008G001700 Sobic004G116200--Sobic001G362900 Sobic004G116200--Sobic004G085100 Sobic004G116200--Sobic004G171500 Sobic004G116200--Sobic005G188000 Sobic009G086800 Sobic009G086800 Sobic004G116200--Sobic009G086800 Sobic004G116200--Sobic008G071900 Sobic003G350900 Sobic003G350900 Sobic004G116200--Sobic003G350900 Sobic010G102900--Sobic008G071900 Sobic010G102900--Sobic003G227800 Sobic010G102900--Sobic001G142600 Sobic010G102900--Sobic005G001500 Sobic010G102900--Sobic009G021300 Sobic010G102900--Sobic004G171500 Sobic010G102900--Sobic008G001700 Sobic005G056300 Sobic005G056300 Sobic010G102900--Sobic005G056300 Sobic003G063900 Sobic003G063900 Sobic010G102900--Sobic003G063900 Sobic002G088000--Sobic004G085100 Sobic002G088000--Sobic001G362900 Sobic002G088000--Sobic004G116200 Sobic002G088000--Sobic005G188000 Sobic002G088000--Sobic004G171500 Sobic002G088000--Sobic008G001700 Sobic002G088000--Sobic003G350900 Sobic002G088000--Sobic002G417900 Sobic002G088000--Sobic003G156100 Sobic002G417900--Sobic001G362900 Sobic002G417900--Sobic004G085100 Sobic002G417900--Sobic009G116500 Sobic002G417900--Sobic001G297800 Sobic002G417900--Sobic003G156100 Sobic002G417900--Sobic004G171500 Sobic002G089400 Sobic002G089400 Sobic002G417900--Sobic002G089400 Sobic008G176600 Sobic008G176600 Sobic002G417900--Sobic008G176600 Sobic002G417900--Sobic002G088000 Sobic007G034900 Sobic007G034900 Sobic009G116500--Sobic007G034900 Sobic009G116500--Sobic002G089400 Sobic002G338600 Sobic002G338600 Sobic009G116500--Sobic002G338600 Sobic004G261000 Sobic004G261000 Sobic009G116500--Sobic004G261000 Sobic010G200200 Sobic010G200200 Sobic009G116500--Sobic010G200200 Sobic007G205100 Sobic007G205100 Sobic009G116500--Sobic007G205100 Sobic009G116500--Sobic001G297800 Sobic008G081700 Sobic008G081700 Sobic009G116500--Sobic008G081700 Sobic001G259250 Sobic001G259250 Sobic009G116500--Sobic001G259250
Octagon: transcription factors


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