Gene annotation
Transcriptome id Sobic.002G053100.1
Synonym
Functional annotation RNA recognition motif containing protein, expressed
UniProt A0A1B6Q9C0
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF362
NCBI CDD KOG0130; RNA-binding protein RBM8/Tsunagi (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G00830 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g08320.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G104800 dnaJ domain containing protein, expressed -
2 Sobic.001G142600 OsFBX103 - F-box domain containing protein, expressed -
3 Sobic.001G392900 - -
4 Sobic.003G063900 - -
5 Sobic.005G090500 - -
6 Sobic.010G102900 protein of unknown function DUF1675 domain containing protein, expressed -
7 Sobic.003G227800 cytochrome P450 72A1, putative, expressed -
8 Sobic.008G071900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
9 Sobic.008G168400 GRAS family transcription factor domain containing protein, expressed K14494: DELLA protein
10 Sobic.003G135000 major facilitator superfamily antiporter, putative, expressed -
11 Sobic.005G021100 - -
12 Sobic.002G089500 DEF8 - Defensin and Defensin-like DEFL family, expressed -
13 Sobic.002G381600 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
14 Sobic.006G080500 helix-loop-helix DNA-binding domain containing protein, expressed -
15 Sobic.004G171500 basic helix-loop-helix, putative, expressed -
16 Sobic.005G056300 no apical meristem protein, putative, expressed -
17 Sobic.005G001500 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
18 Sobic.001G129900 indole-3-acetate beta-glucosyltransferase, putative, expressed K13692: UDP-glucose:(indol-3-yl)acetate beta-D-glucosyltransferase
19 Sobic.010G085700 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -
20 Sobic.009G040000 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -


Gene co-expression network
sample Sobic002G053100 Sobic002G053100 Sobic006G104800 Sobic006G104800 Sobic002G053100--Sobic006G104800 Sobic001G142600 Sobic001G142600 Sobic002G053100--Sobic001G142600 Sobic001G392900 Sobic001G392900 Sobic002G053100--Sobic001G392900 Sobic003G063900 Sobic003G063900 Sobic002G053100--Sobic003G063900 Sobic005G090500 Sobic005G090500 Sobic002G053100--Sobic005G090500 Sobic010G102900 Sobic010G102900 Sobic002G053100--Sobic010G102900 Sobic003G227800 Sobic003G227800 Sobic002G053100--Sobic003G227800 Sobic008G071900 Sobic008G071900 Sobic002G053100--Sobic008G071900 Sobic008G168400 Sobic008G168400 Sobic002G053100--Sobic008G168400 Sobic003G135000 Sobic003G135000 Sobic006G104800--Sobic003G135000 Sobic006G080500 Sobic006G080500 Sobic006G104800--Sobic006G080500 Sobic002G381600 Sobic002G381600 Sobic006G104800--Sobic002G381600 Sobic006G104800--Sobic001G142600 Sobic005G056300 Sobic005G056300 Sobic006G104800--Sobic005G056300 Sobic006G104800--Sobic001G392900 Sobic006G104800--Sobic002G053100 Sobic001G158600 Sobic001G158600 Sobic006G104800--Sobic001G158600 Sobic001G129900 Sobic001G129900 Sobic006G104800--Sobic001G129900 Sobic001G142600--Sobic003G227800 Sobic001G142600--Sobic010G102900 Sobic001G142600--Sobic006G104800 Sobic001G142600--Sobic003G063900 Sobic001G142600--Sobic008G071900 Sobic005G001500 Sobic005G001500 Sobic001G142600--Sobic005G001500 Sobic001G142600--Sobic002G053100 Sobic002G408700 Sobic002G408700 Sobic001G142600--Sobic002G408700 Sobic001G142600--Sobic005G056300 Sobic005G021100 Sobic005G021100 Sobic001G392900--Sobic005G021100 Sobic002G089500 Sobic002G089500 Sobic001G392900--Sobic002G089500 Sobic001G392900--Sobic008G168400 Sobic001G392900--Sobic002G381600 Sobic001G392900--Sobic001G129900 Sobic001G392900--Sobic006G104800 Sobic009G052400 Sobic009G052400 Sobic001G392900--Sobic009G052400 Sobic004G171600 Sobic004G171600 Sobic001G392900--Sobic004G171600 Sobic001G392900--Sobic003G063900 Sobic003G063900--Sobic008G168400 Sobic003G063900--Sobic003G227800 Sobic005G079300 Sobic005G079300 Sobic003G063900--Sobic005G079300 Sobic003G063900--Sobic001G129900 Sobic003G063900--Sobic002G381600 Sobic003G063900--Sobic006G080500 Sobic003G063900--Sobic005G056300 Sobic003G063900--Sobic001G142600 Sobic003G063900--Sobic009G052400 Sobic005G074800 Sobic005G074800 Sobic005G090500--Sobic005G074800 Sobic005G148600 Sobic005G148600 Sobic005G090500--Sobic005G148600 Sobic005G090500--Sobic002G053100 Sobic004G196200 Sobic004G196200 Sobic005G090500--Sobic004G196200 Sobic006G271400 Sobic006G271400 Sobic005G090500--Sobic006G271400 Sobic004G171500 Sobic004G171500 Sobic005G090500--Sobic004G171500 Sobic006G064700 Sobic006G064700 Sobic005G090500--Sobic006G064700 Sobic008G001700 Sobic008G001700 Sobic005G090500--Sobic008G001700 Sobic005G074900 Sobic005G074900 Sobic005G090500--Sobic005G074900 Sobic010G102900--Sobic008G071900 Sobic010G102900--Sobic003G227800 Sobic010G102900--Sobic001G142600 Sobic010G102900--Sobic005G001500 Sobic009G021300 Sobic009G021300 Sobic010G102900--Sobic009G021300 Sobic010G102900--Sobic004G171500 Sobic010G102900--Sobic008G001700 Sobic010G102900--Sobic005G056300 Sobic010G102900--Sobic003G063900 Sobic003G227800--Sobic005G056300 Sobic003G227800--Sobic010G102900 Sobic003G227800--Sobic001G142600 Sobic003G227800--Sobic003G063900 Sobic003G227800--Sobic005G079300 Sobic003G227800--Sobic003G135000 Sobic003G227800--Sobic008G071900 Sobic003G227800--Sobic006G080500 Sobic003G227800--Sobic005G001500 Sobic008G071900--Sobic010G102900 Sobic008G071900--Sobic004G171500 Sobic008G071900--Sobic008G001700 Sobic008G071900--Sobic003G227800 Sobic001G362900 Sobic001G362900 Sobic008G071900--Sobic001G362900 Sobic008G071900--Sobic001G142600 Sobic008G071900--Sobic009G021300 Sobic004G085100 Sobic004G085100 Sobic008G071900--Sobic004G085100 Sobic008G071900--Sobic005G001500 Sobic008G168400--Sobic001G129900 Sobic008G168400--Sobic002G381600 Sobic008G168400--Sobic005G079300 Sobic008G168400--Sobic006G080500 Sobic008G168400--Sobic009G052400 Sobic008G168400--Sobic003G063900 Sobic008G168400--Sobic005G021100 Sobic007G187100 Sobic007G187100 Sobic008G168400--Sobic007G187100 Sobic008G168400--Sobic001G392900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.