Gene annotation
Transcriptome id Sobic.002G089500.1
Synonym Sb02g007400, PDF2.3, LCR68
Functional annotation DEF8 - Defensin and Defensin-like DEFL family, expressed
UniProt C5X207
Pfam PF00304
Panther DB PTHR33147 PTHR33147:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02130 : low-molecular-weight cysteine-rich 68
RAP-DB (Rice) LOC_Os03g03810.1 : DEF8 - Defensin and Defensin-like DEFL family, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G089500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G021100 - -
2 Sobic.001G392900 - -
3 Sobic.002G007700 nodulin family protein, putative, expressed -
4 Sobic.004G171600 helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.001G233600 expressed protein -
6 Sobic.002G293100 ZOS9-17 - C2H2 zinc finger protein, expressed -
7 Sobic.005G077900 OsFBX411 - F-box domain containing protein, expressed -
8 Sobic.001G200900 LTPL160 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.005G174000 - -
10 Sobic.002G381600 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
11 Sobic.008G168400 GRAS family transcription factor domain containing protein, expressed K14494: DELLA protein
12 Sobic.003G207100 expressed protein -
13 Sobic.009G040000 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -
14 Sobic.003G091500 expressed protein -
15 Sobic.008G184100 aspartic proteinase, putative, expressed -
16 Sobic.009G052400 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
17 Sobic.008G031400 OsSub63 - Putative Subtilisin homologue, expressed -
18 Sobic.008G088900 hypothetical protein -
19 Sobic.001G129900 indole-3-acetate beta-glucosyltransferase, putative, expressed K13692: UDP-glucose:(indol-3-yl)acetate beta-D-glucosyltransferase
20 Sobic.005G174500 - -


Gene co-expression network
sample Sobic002G089500 Sobic002G089500 Sobic005G021100 Sobic005G021100 Sobic002G089500--Sobic005G021100 Sobic001G392900 Sobic001G392900 Sobic002G089500--Sobic001G392900 Sobic002G007700 Sobic002G007700 Sobic002G089500--Sobic002G007700 Sobic004G171600 Sobic004G171600 Sobic002G089500--Sobic004G171600 Sobic001G233600 Sobic001G233600 Sobic002G089500--Sobic001G233600 Sobic002G293100 Sobic002G293100 Sobic002G089500--Sobic002G293100 Sobic005G077900 Sobic005G077900 Sobic002G089500--Sobic005G077900 Sobic001G200900 Sobic001G200900 Sobic002G089500--Sobic001G200900 Sobic005G174000 Sobic005G174000 Sobic002G089500--Sobic005G174000 Sobic005G021100--Sobic002G089500 Sobic005G021100--Sobic001G392900 Sobic005G021100--Sobic004G171600 Sobic002G381600 Sobic002G381600 Sobic005G021100--Sobic002G381600 Sobic008G168400 Sobic008G168400 Sobic005G021100--Sobic008G168400 Sobic005G021100--Sobic002G293100 Sobic009G052400 Sobic009G052400 Sobic005G021100--Sobic009G052400 Sobic001G129900 Sobic001G129900 Sobic005G021100--Sobic001G129900 Sobic005G021100--Sobic005G077900 Sobic001G392900--Sobic005G021100 Sobic001G392900--Sobic002G089500 Sobic001G392900--Sobic008G168400 Sobic001G392900--Sobic002G381600 Sobic001G392900--Sobic001G129900 Sobic006G104800 Sobic006G104800 Sobic001G392900--Sobic006G104800 Sobic001G392900--Sobic009G052400 Sobic001G392900--Sobic004G171600 Sobic003G063900 Sobic003G063900 Sobic001G392900--Sobic003G063900 Sobic002G007700--Sobic001G233600 Sobic002G007700--Sobic004G171600 Sobic002G007700--Sobic002G089500 Sobic002G007700--Sobic005G077900 Sobic002G007700--Sobic005G174000 Sobic003G091500 Sobic003G091500 Sobic002G007700--Sobic003G091500 Sobic008G184100 Sobic008G184100 Sobic002G007700--Sobic008G184100 Sobic002G007700--Sobic005G021100 Sobic008G088900 Sobic008G088900 Sobic002G007700--Sobic008G088900 Sobic004G171600--Sobic005G077900 Sobic004G171600--Sobic005G174000 Sobic004G171600--Sobic001G200900 Sobic004G171600--Sobic002G293100 Sobic004G171600--Sobic002G007700 Sobic004G171600--Sobic001G233600 Sobic004G171600--Sobic005G021100 Sobic004G171600--Sobic008G088900 Sobic004G171600--Sobic002G089500 Sobic001G233600--Sobic002G007700 Sobic001G233600--Sobic004G171600 Sobic001G233600--Sobic005G077900 Sobic001G233600--Sobic005G174000 Sobic001G233600--Sobic001G200900 Sobic001G233600--Sobic002G089500 Sobic001G233600--Sobic005G021100 Sobic001G233600--Sobic008G088900 Sobic001G233600--Sobic002G293100 Sobic002G293100--Sobic004G171600 Sobic002G293100--Sobic005G077900 Sobic002G293100--Sobic005G174000 Sobic002G293100--Sobic001G200900 Sobic002G293100--Sobic005G021100 Sobic009G061900 Sobic009G061900 Sobic002G293100--Sobic009G061900 Sobic001G489075 Sobic001G489075 Sobic002G293100--Sobic001G489075 Sobic002G293100--Sobic002G089500 Sobic002G293100--Sobic001G233600 Sobic005G077900--Sobic004G171600 Sobic005G077900--Sobic005G174000 Sobic005G077900--Sobic001G200900 Sobic005G077900--Sobic002G293100 Sobic005G077900--Sobic001G233600 Sobic005G077900--Sobic002G007700 Sobic005G077900--Sobic005G021100 Sobic005G077900--Sobic001G489075 Sobic005G077900--Sobic008G088900 Sobic001G200900--Sobic005G174000 Sobic001G200900--Sobic004G171600 Sobic001G200900--Sobic009G061900 Sobic001G200900--Sobic005G077900 Sobic005G186300 Sobic005G186300 Sobic001G200900--Sobic005G186300 Sobic002G192600 Sobic002G192600 Sobic001G200900--Sobic002G192600 Sobic001G200900--Sobic002G293100 Sobic001G200900--Sobic009G052400 Sobic001G200900--Sobic001G233600 Sobic005G174000--Sobic001G200900 Sobic005G174000--Sobic004G171600 Sobic005G174000--Sobic005G077900 Sobic005G174000--Sobic001G489075 Sobic005G174000--Sobic001G233600 Sobic005G174000--Sobic002G293100 Sobic005G174000--Sobic008G088900 Sobic005G174000--Sobic009G061900 Sobic005G146966 Sobic005G146966 Sobic005G174000--Sobic005G146966
Octagon: transcription factors


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