Gene annotation
Transcriptome id Sobic.010G021900.1
Synonym Sb10g002080
Functional annotation rad1, putative, expressed
UniProt C5Z3B4
Pfam PF02144
Panther DB PTHR10870
NCBI CDD KOG3194; Checkpoint 9-1-1 complex, RAD1 component
KEGG Orthology K02830; HRAD1, cell cycle checkpoint protein
Gene Ontology GO:0006281; DNA repair GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G17760 : damaged DNA binding;exodeoxyribonuclease IIIs
RAP-DB (Rice) LOC_Os06g04190.1 : rad1, putative, expressed
MaizeGDB (Corn) Zm00025a041391
Brachypodium PNT76595 , KQK19724 , KQK19725
Barley HORVU7Hr1G012570.21 , HORVU7Hr1G012570.20 , HORVU7Hr1G012570.22 , HORVU7Hr1G012570.18 , HORVU7Hr1G012570.19 , HORVU7Hr1G012570.10 , HORVU7Hr1G012570.11 , HORVU7Hr1G012570.12 , HORVU7Hr1G012570.13 , HORVU7Hr1G012570.14 , HORVU7Hr1G012570.15 , HORVU7Hr1G012570.16 , HORVU7Hr1G012570.17 , HORVU7Hr1G012570.8 , HORVU7Hr1G012570.9 , HORVU7Hr1G012570.2 , HORVU7Hr1G012570.3 , HORVU7Hr1G012570.1 , HORVU7Hr1G012570.6 , HORVU7Hr1G012570.7 , HORVU7Hr1G012570.4 , HORVU7Hr1G012570.5
Wheat TraesCS4A02G419800 , TraesCS7D02G063600 , TraesCS7A02G068900 , TraesCS7D02G063200 , TraesCS7A02G068700 , TraesCS4A02G419600 , TraesCS7D02G063400 , TraesCS7D02G063400 , TraesCS7D02G063400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G303800 expressed protein -
2 Sobic.004G208100 expressed protein -
3 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
4 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
5 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
6 Sobic.001G122100 protein kinase family protein, putative, expressed K08866: TTK, serine/threonine-protein kinase TTK/MPS1
7 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
8 Sobic.002G133000 delta14-sterol reductase, putative, expressed K00222: TM7SF2, Delta14-sterol reductase
9 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
10 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
11 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
12 Sobic.001G369800 monocopper oxidase, putative, expressed -
13 Sobic.003G318900 DNA repair metallo-beta-lactamase, putative, expressed K15341: DCLRE1B, DNA cross-link repair 1B protein
14 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
15 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
16 Sobic.007G006800 pentatricopeptide, putative, expressed -
17 Sobic.005G157300 protein binding protein, putative, expressed -
18 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G055600 expressed protein -
20 Sobic.001G118800 homologous-pairing protein meu13, putative, expressed K06695: 26S proteasome regulatory subunit, ATPase 3, interacting protein


Gene co-expression network
sample Sobic010G021900 Sobic010G021900 Sobic002G303800 Sobic002G303800 Sobic010G021900--Sobic002G303800 Sobic004G208100 Sobic004G208100 Sobic010G021900--Sobic004G208100 Sobic003G183700 Sobic003G183700 Sobic010G021900--Sobic003G183700 Sobic002G021200 Sobic002G021200 Sobic010G021900--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic010G021900--Sobic006G281900 Sobic001G122100 Sobic001G122100 Sobic010G021900--Sobic001G122100 Sobic003G444300 Sobic003G444300 Sobic010G021900--Sobic003G444300 Sobic002G133000 Sobic002G133000 Sobic010G021900--Sobic002G133000 Sobic006G051000 Sobic006G051000 Sobic010G021900--Sobic006G051000 Sobic002G303800--Sobic003G444300 Sobic006G120600 Sobic006G120600 Sobic002G303800--Sobic006G120600 Sobic001G169800 Sobic001G169800 Sobic002G303800--Sobic001G169800 Sobic002G303800--Sobic003G183700 Sobic010G103700 Sobic010G103700 Sobic002G303800--Sobic010G103700 Sobic001G146900 Sobic001G146900 Sobic002G303800--Sobic001G146900 Sobic003G179500 Sobic003G179500 Sobic002G303800--Sobic003G179500 Sobic002G303800--Sobic006G051000 Sobic001G083300 Sobic001G083300 Sobic002G303800--Sobic001G083300 Sobic004G208100--Sobic010G021900 Sobic004G208100--Sobic003G444300 Sobic004G208100--Sobic002G303800 Sobic001G238900 Sobic001G238900 Sobic004G208100--Sobic001G238900 Sobic004G208100--Sobic002G133000 Sobic004G208100--Sobic001G169800 Sobic004G208100--Sobic001G122100 Sobic001G235700 Sobic001G235700 Sobic004G208100--Sobic001G235700 Sobic002G246900 Sobic002G246900 Sobic004G208100--Sobic002G246900 Sobic003G183700--Sobic006G051000 Sobic009G087000 Sobic009G087000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic005G110535 Sobic005G110535 Sobic003G183700--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic003G183700--Sobic008G129200 Sobic004G321400 Sobic004G321400 Sobic003G183700--Sobic004G321400 Sobic010G147700 Sobic010G147700 Sobic003G183700--Sobic010G147700 Sobic007G187700 Sobic007G187700 Sobic002G021200--Sobic007G187700 Sobic001G377700 Sobic001G377700 Sobic002G021200--Sobic001G377700 Sobic002G168000 Sobic002G168000 Sobic002G021200--Sobic002G168000 Sobic002G021200--Sobic006G281900 Sobic001G054700 Sobic001G054700 Sobic002G021200--Sobic001G054700 Sobic003G292700 Sobic003G292700 Sobic002G021200--Sobic003G292700 Sobic003G055600 Sobic003G055600 Sobic002G021200--Sobic003G055600 Sobic005G157300 Sobic005G157300 Sobic002G021200--Sobic005G157300 Sobic009G077300 Sobic009G077300 Sobic002G021200--Sobic009G077300 Sobic006G281900--Sobic002G168000 Sobic006G281900--Sobic002G021200 Sobic009G188900 Sobic009G188900 Sobic006G281900--Sobic009G188900 Sobic001G290500 Sobic001G290500 Sobic006G281900--Sobic001G290500 Sobic001G199500 Sobic001G199500 Sobic006G281900--Sobic001G199500 Sobic001G425700 Sobic001G425700 Sobic006G281900--Sobic001G425700 Sobic009G225500 Sobic009G225500 Sobic006G281900--Sobic009G225500 Sobic006G281900--Sobic007G187700 Sobic003G024000 Sobic003G024000 Sobic006G281900--Sobic003G024000 Sobic001G122100--Sobic002G303800 Sobic009G087300 Sobic009G087300 Sobic001G122100--Sobic009G087300 Sobic006G281400 Sobic006G281400 Sobic001G122100--Sobic006G281400 Sobic003G369200 Sobic003G369200 Sobic001G122100--Sobic003G369200 Sobic001G122100--Sobic002G021200 Sobic001G122100--Sobic003G444300 Sobic009G052100 Sobic009G052100 Sobic001G122100--Sobic009G052100 Sobic010G105400 Sobic010G105400 Sobic001G122100--Sobic010G105400 Sobic010G252700 Sobic010G252700 Sobic001G122100--Sobic010G252700 Sobic001G456500 Sobic001G456500 Sobic003G444300--Sobic001G456500 Sobic003G444300--Sobic001G083300 Sobic003G444300--Sobic001G169800 Sobic001G105800 Sobic001G105800 Sobic003G444300--Sobic001G105800 Sobic001G142000 Sobic001G142000 Sobic003G444300--Sobic001G142000 Sobic004G331600 Sobic004G331600 Sobic003G444300--Sobic004G331600 Sobic003G201000 Sobic003G201000 Sobic003G444300--Sobic003G201000 Sobic003G444300--Sobic002G303800 Sobic003G444300--Sobic010G105400 Sobic002G133000--Sobic002G303800 Sobic007G043400 Sobic007G043400 Sobic002G133000--Sobic007G043400 Sobic005G088900 Sobic005G088900 Sobic002G133000--Sobic005G088900 Sobic004G330600 Sobic004G330600 Sobic002G133000--Sobic004G330600 Sobic002G133000--Sobic004G208100 Sobic002G133000--Sobic006G120600 Sobic001G371100 Sobic001G371100 Sobic002G133000--Sobic001G371100 Sobic002G133000--Sobic010G021900 Sobic004G047500 Sobic004G047500 Sobic002G133000--Sobic004G047500 Sobic006G051000--Sobic003G183700 Sobic006G051000--Sobic006G195500 Sobic006G051000--Sobic010G103700 Sobic006G196600 Sobic006G196600 Sobic006G051000--Sobic006G196600 Sobic006G051000--Sobic003G179500 Sobic006G051000--Sobic009G087000 Sobic009G109300 Sobic009G109300 Sobic006G051000--Sobic009G109300 Sobic006G051000--Sobic008G129200 Sobic006G051000--Sobic005G110535
Octagon: transcription factors


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