Gene annotation
Transcriptome id Sobic.003G318900.1
Synonym Sb03g036570
Functional annotation DNA repair metallo-beta-lactamase, putative, expressed
UniProt C5XLR8
Pfam PF12706 PF07522
Panther DB PTHR23240 PTHR23240:SF9
NCBI CDD -
KEGG Orthology K15341; DCLRE1B, DNA cross-link repair 1B protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G27410 : DNA repair metallo-beta-lactamase family protein
RAP-DB (Rice) LOC_Os01g57440.1 : DNA repair metallo-beta-lactamase, putative, expressed
MaizeGDB (Corn) Zm00025a027266 , Zm00025a027265 , Zm00025a039881
Brachypodium PNT72993 , PNT72992
Barley HORVU3Hr1G077010.2 , HORVU3Hr1G077010.3 , HORVU3Hr1G077010.4 , HORVU3Hr1G077010.5 , HORVU3Hr1G077010.6 , HORVU3Hr1G077010.7
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
2 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
3 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
4 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
5 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
7 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
8 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
9 Sobic.002G215200 lung seven transmembrane domain containing protein, putative, expressed -
10 Sobic.003G055600 expressed protein -
11 Sobic.006G142500 protein kinase, putative, expressed -
12 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
13 Sobic.010G086000 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
14 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
15 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
16 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
17 Sobic.001G054700 seed specific protein Bn15D14A, putative, expressed -
18 Sobic.006G196600 expressed protein -
19 Sobic.009G087300 mitotic checkpoint family protein, putative, expressed -
20 Sobic.003G420300 zinc finger protein, putative, expressed -


Gene co-expression network
sample Sobic003G318900 Sobic003G318900 Sobic009G172950 Sobic009G172950 Sobic003G318900--Sobic009G172950 Sobic003G032200 Sobic003G032200 Sobic003G318900--Sobic003G032200 Sobic003G292700 Sobic003G292700 Sobic003G318900--Sobic003G292700 Sobic002G021200 Sobic002G021200 Sobic003G318900--Sobic002G021200 Sobic003G201000 Sobic003G201000 Sobic003G318900--Sobic003G201000 Sobic001G083300 Sobic001G083300 Sobic003G318900--Sobic001G083300 Sobic003G444300 Sobic003G444300 Sobic003G318900--Sobic003G444300 Sobic001G377700 Sobic001G377700 Sobic003G318900--Sobic001G377700 Sobic002G215200 Sobic002G215200 Sobic003G318900--Sobic002G215200 Sobic003G183700 Sobic003G183700 Sobic009G172950--Sobic003G183700 Sobic009G087000 Sobic009G087000 Sobic009G172950--Sobic009G087000 Sobic009G172950--Sobic003G032200 Sobic009G172950--Sobic003G444300 Sobic009G172950--Sobic001G083300 Sobic009G184200 Sobic009G184200 Sobic009G172950--Sobic009G184200 Sobic004G321400 Sobic004G321400 Sobic009G172950--Sobic004G321400 Sobic001G105800 Sobic001G105800 Sobic009G172950--Sobic001G105800 Sobic001G146900 Sobic001G146900 Sobic009G172950--Sobic001G146900 Sobic003G032200--Sobic009G184200 Sobic010G086000 Sobic010G086000 Sobic003G032200--Sobic010G086000 Sobic010G105400 Sobic010G105400 Sobic003G032200--Sobic010G105400 Sobic010G241100 Sobic010G241100 Sobic003G032200--Sobic010G241100 Sobic003G032200--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic003G032200--Sobic006G142500 Sobic002G296000 Sobic002G296000 Sobic003G032200--Sobic002G296000 Sobic003G444100 Sobic003G444100 Sobic003G032200--Sobic003G444100 Sobic002G204400 Sobic002G204400 Sobic003G032200--Sobic002G204400 Sobic003G420300 Sobic003G420300 Sobic003G292700--Sobic003G420300 Sobic003G226700 Sobic003G226700 Sobic003G292700--Sobic003G226700 Sobic009G202801 Sobic009G202801 Sobic003G292700--Sobic009G202801 Sobic001G054700 Sobic001G054700 Sobic003G292700--Sobic001G054700 Sobic003G292700--Sobic006G142500 Sobic003G292700--Sobic003G032200 Sobic003G292700--Sobic001G377700 Sobic003G292700--Sobic002G021200 Sobic008G083500 Sobic008G083500 Sobic003G292700--Sobic008G083500 Sobic007G187700 Sobic007G187700 Sobic002G021200--Sobic007G187700 Sobic002G021200--Sobic001G377700 Sobic002G168000 Sobic002G168000 Sobic002G021200--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic002G021200--Sobic006G281900 Sobic002G021200--Sobic001G054700 Sobic002G021200--Sobic003G292700 Sobic003G055600 Sobic003G055600 Sobic002G021200--Sobic003G055600 Sobic005G157300 Sobic005G157300 Sobic002G021200--Sobic005G157300 Sobic009G077300 Sobic009G077300 Sobic002G021200--Sobic009G077300 Sobic010G147700 Sobic010G147700 Sobic003G201000--Sobic010G147700 Sobic003G369200 Sobic003G369200 Sobic003G201000--Sobic003G369200 Sobic003G201000--Sobic009G087000 Sobic003G201000--Sobic003G444300 Sobic005G144600 Sobic005G144600 Sobic003G201000--Sobic005G144600 Sobic010G054600 Sobic010G054600 Sobic003G201000--Sobic010G054600 Sobic006G029300 Sobic006G029300 Sobic003G201000--Sobic006G029300 Sobic002G290000 Sobic002G290000 Sobic003G201000--Sobic002G290000 Sobic005G110535 Sobic005G110535 Sobic003G201000--Sobic005G110535 Sobic001G456500 Sobic001G456500 Sobic001G083300--Sobic001G456500 Sobic002G223900 Sobic002G223900 Sobic001G083300--Sobic002G223900 Sobic001G083300--Sobic003G444300 Sobic001G083300--Sobic010G147700 Sobic001G083300--Sobic009G087000 Sobic001G083300--Sobic003G183700 Sobic008G129200 Sobic008G129200 Sobic001G083300--Sobic008G129200 Sobic001G083300--Sobic001G105800 Sobic004G331600 Sobic004G331600 Sobic001G083300--Sobic004G331600 Sobic003G444300--Sobic001G456500 Sobic003G444300--Sobic001G083300 Sobic001G169800 Sobic001G169800 Sobic003G444300--Sobic001G169800 Sobic003G444300--Sobic001G105800 Sobic001G142000 Sobic001G142000 Sobic003G444300--Sobic001G142000 Sobic003G444300--Sobic004G331600 Sobic003G444300--Sobic003G201000 Sobic002G303800 Sobic002G303800 Sobic003G444300--Sobic002G303800 Sobic003G444300--Sobic010G105400 Sobic001G377700--Sobic002G290000 Sobic001G377700--Sobic002G021200 Sobic001G377700--Sobic003G183700 Sobic001G377700--Sobic005G110535 Sobic001G377700--Sobic003G055600 Sobic006G195500 Sobic006G195500 Sobic001G377700--Sobic006G195500 Sobic001G377700--Sobic007G187700 Sobic007G125300 Sobic007G125300 Sobic001G377700--Sobic007G125300 Sobic001G377700--Sobic005G157300 Sobic003G289800 Sobic003G289800 Sobic002G215200--Sobic003G289800 Sobic002G215200--Sobic003G183700 Sobic006G051000 Sobic006G051000 Sobic002G215200--Sobic006G051000 Sobic002G215200--Sobic003G369200 Sobic002G215200--Sobic009G087000 Sobic004G243900 Sobic004G243900 Sobic002G215200--Sobic004G243900 Sobic002G215200--Sobic003G201000 Sobic002G215200--Sobic006G195500 Sobic002G215200--Sobic003G318900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.