Gene annotation
Transcriptome id Sobic.008G050700.3,Sobic.008G050700.1,Sobic.008G050700.2
Synonym Sb08g004270
Functional annotation OsSigP5 - Putative Type I Signal Peptidase homologue
employs a putative Ser/His catalytic dyad, expressed
UniProt C5YSM3
Pfam PF00717
Panther DB PTHR10806 PTHR10806:SF10
NCBI CDD KOG3342; Signal peptidase I
KEGG Orthology K13280; SEC11, signal peptidase I
Gene Ontology GO:0016020; membrane GO:0008233peptidase activity GO:0006465signal peptide processing


Orthologs (automatic annotation)
TAIR AT1G52600 : Peptidase S24/S26A/S26B/S26C family protein
RAP-DB (Rice) LOC_Os06g16260.1 : OsSigP5 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed
MaizeGDB (Corn) Zm00025a043350 , Zm00025a036923
Brachypodium KQK12600 , KQK12601 , KQK09700 , KQK06575 , KQK12599
Barley HORVU5Hr1G109380.4 , HORVU1Hr1G057530.2 , HORVU1Hr1G057530.1 , HORVU5Hr1G109380.2 , HORVU1Hr1G057530.4 , HORVU5Hr1G109380.3 , HORVU1Hr1G057530.3
Wheat TraesCS5B02G463200 , TraesCS5D02G466200 , TraesCS1A02G233200 , TraesCS1D02G238300 , TraesCS1B02G249800 , TraesCS5A02G455600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G050700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G140600 stromal cell-derived factor 2-like protein precursor, putative, expressed -
2 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
3 Sobic.002G377200 expressed protein -
4 Sobic.001G025700 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
5 Sobic.002G222200 OsPDIL2-3 protein disulfide isomerase PDIL2-3, expressed K09584: PDIA6, protein disulfide-isomerase A6
6 Sobic.008G149500 expressed protein -
7 Sobic.010G069500 zinc ion binding protein, putative, expressed -
8 Sobic.002G186500 UPF0041 domain containing protein, putative, expressed -
9 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
10 Sobic.004G011700 DnaK family protein, putative, expressed K09490: HSPA5, endoplasmic reticulum chaperone BiP
11 Sobic.004G328100 expressed protein -
12 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
13 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
14 Sobic.002G322400 OsPDIL5-4 protein disulfide isomerase PDIL5-4, expressed -
15 Sobic.010G153400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
16 Sobic.009G228600 CHCH domain containing protein, expressed K18183: cytochrome c oxidase assembly protein subunit 19
17 Sobic.003G396800 expressed protein K17413: small subunit ribosomal protein S35
18 Sobic.001G143900 expressed protein -
19 Sobic.006G272300 pentatricopeptide, putative, expressed -
20 Sobic.002G274700 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase


Gene co-expression network
sample Sobic008G050700 Sobic008G050700 Sobic007G140600 Sobic007G140600 Sobic008G050700--Sobic007G140600 Sobic009G063800 Sobic009G063800 Sobic008G050700--Sobic009G063800 Sobic002G377200 Sobic002G377200 Sobic008G050700--Sobic002G377200 Sobic001G025700 Sobic001G025700 Sobic008G050700--Sobic001G025700 Sobic002G222200 Sobic002G222200 Sobic008G050700--Sobic002G222200 Sobic008G149500 Sobic008G149500 Sobic008G050700--Sobic008G149500 Sobic010G069500 Sobic010G069500 Sobic008G050700--Sobic010G069500 Sobic002G186500 Sobic002G186500 Sobic008G050700--Sobic002G186500 Sobic003G308300 Sobic003G308300 Sobic008G050700--Sobic003G308300 Sobic007G140600--Sobic008G050700 Sobic007G140600--Sobic003G308300 Sobic001G347700 Sobic001G347700 Sobic007G140600--Sobic001G347700 Sobic001G457000 Sobic001G457000 Sobic007G140600--Sobic001G457000 Sobic003G346500 Sobic003G346500 Sobic007G140600--Sobic003G346500 Sobic010G028400 Sobic010G028400 Sobic007G140600--Sobic010G028400 Sobic001G485300 Sobic001G485300 Sobic007G140600--Sobic001G485300 Sobic007G140600--Sobic010G069500 Sobic004G011700 Sobic004G011700 Sobic007G140600--Sobic004G011700 Sobic002G182000 Sobic002G182000 Sobic009G063800--Sobic002G182000 Sobic010G250000 Sobic010G250000 Sobic009G063800--Sobic010G250000 Sobic007G146600 Sobic007G146600 Sobic009G063800--Sobic007G146600 Sobic001G309200 Sobic001G309200 Sobic009G063800--Sobic001G309200 Sobic002G322400 Sobic002G322400 Sobic009G063800--Sobic002G322400 Sobic010G018900 Sobic010G018900 Sobic009G063800--Sobic010G018900 Sobic001G203600 Sobic001G203600 Sobic009G063800--Sobic001G203600 Sobic002G348400 Sobic002G348400 Sobic009G063800--Sobic002G348400 Sobic008G072500 Sobic008G072500 Sobic009G063800--Sobic008G072500 Sobic010G153400 Sobic010G153400 Sobic002G377200--Sobic010G153400 Sobic002G392400 Sobic002G392400 Sobic002G377200--Sobic002G392400 Sobic002G193500 Sobic002G193500 Sobic002G377200--Sobic002G193500 Sobic001G440000 Sobic001G440000 Sobic002G377200--Sobic001G440000 Sobic002G377200--Sobic008G050700 Sobic002G274700 Sobic002G274700 Sobic002G377200--Sobic002G274700 Sobic002G239400 Sobic002G239400 Sobic002G377200--Sobic002G239400 Sobic003G293400 Sobic003G293400 Sobic002G377200--Sobic003G293400 Sobic001G143900 Sobic001G143900 Sobic002G377200--Sobic001G143900 Sobic001G025700--Sobic003G308300 Sobic008G013200 Sobic008G013200 Sobic001G025700--Sobic008G013200 Sobic003G255700 Sobic003G255700 Sobic001G025700--Sobic003G255700 Sobic007G153500 Sobic007G153500 Sobic001G025700--Sobic007G153500 Sobic004G328100 Sobic004G328100 Sobic001G025700--Sobic004G328100 Sobic001G025700--Sobic002G348400 Sobic009G186700 Sobic009G186700 Sobic001G025700--Sobic009G186700 Sobic001G025700--Sobic010G069500 Sobic007G148400 Sobic007G148400 Sobic001G025700--Sobic007G148400 Sobic001G073600 Sobic001G073600 Sobic002G222200--Sobic001G073600 Sobic010G002800 Sobic010G002800 Sobic002G222200--Sobic010G002800 Sobic008G018200 Sobic008G018200 Sobic002G222200--Sobic008G018200 Sobic002G222200--Sobic004G011700 Sobic002G232400 Sobic002G232400 Sobic002G222200--Sobic002G232400 Sobic001G135200 Sobic001G135200 Sobic002G222200--Sobic001G135200 Sobic009G224400 Sobic009G224400 Sobic002G222200--Sobic009G224400 Sobic001G352800 Sobic001G352800 Sobic002G222200--Sobic001G352800 Sobic007G119600 Sobic007G119600 Sobic002G222200--Sobic007G119600 Sobic004G100100 Sobic004G100100 Sobic008G149500--Sobic004G100100 Sobic008G149500--Sobic001G135200 Sobic009G259200 Sobic009G259200 Sobic008G149500--Sobic009G259200 Sobic008G149500--Sobic002G222200 Sobic004G155100 Sobic004G155100 Sobic008G149500--Sobic004G155100 Sobic001G501600 Sobic001G501600 Sobic008G149500--Sobic001G501600 Sobic003G016300 Sobic003G016300 Sobic008G149500--Sobic003G016300 Sobic008G149500--Sobic009G224400 Sobic009G244900 Sobic009G244900 Sobic008G149500--Sobic009G244900 Sobic001G188000 Sobic001G188000 Sobic010G069500--Sobic001G188000 Sobic010G069500--Sobic004G328100 Sobic010G069500--Sobic003G308300 Sobic004G329201 Sobic004G329201 Sobic010G069500--Sobic004G329201 Sobic002G304500 Sobic002G304500 Sobic010G069500--Sobic002G304500 Sobic002G377900 Sobic002G377900 Sobic010G069500--Sobic002G377900 Sobic010G069500--Sobic003G255700 Sobic010G069500--Sobic010G153400 Sobic001G306800 Sobic001G306800 Sobic010G069500--Sobic001G306800 Sobic007G012900 Sobic007G012900 Sobic002G186500--Sobic007G012900 Sobic001G387200 Sobic001G387200 Sobic002G186500--Sobic001G387200 Sobic008G018300 Sobic008G018300 Sobic002G186500--Sobic008G018300 Sobic002G255400 Sobic002G255400 Sobic002G186500--Sobic002G255400 Sobic004G173700 Sobic004G173700 Sobic002G186500--Sobic004G173700 Sobic010G231700 Sobic010G231700 Sobic002G186500--Sobic010G231700 Sobic002G186500--Sobic004G100100 Sobic006G041800 Sobic006G041800 Sobic002G186500--Sobic006G041800 Sobic002G186500--Sobic007G119600 Sobic003G308300--Sobic003G255700 Sobic003G308300--Sobic008G013200 Sobic003G308300--Sobic009G186700 Sobic003G308300--Sobic007G148400 Sobic007G218600 Sobic007G218600 Sobic003G308300--Sobic007G218600 Sobic001G305900 Sobic001G305900 Sobic003G308300--Sobic001G305900 Sobic003G308300--Sobic004G328100 Sobic006G100266 Sobic006G100266 Sobic003G308300--Sobic006G100266 Sobic003G270100 Sobic003G270100 Sobic003G308300--Sobic003G270100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.