Gene annotation
Transcriptome id Sobic.007G140600.1
Synonym Sb07g021620, AtSDF2, ATSDL, SDF2
Functional annotation stromal cell-derived factor 2-like protein precursor, putative, expressed
UniProt C5YLK5
Pfam PF02815
Panther DB PTHR10050 PTHR10050:SF33
NCBI CDD KOG3358; Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT2G25110 : stromal cell-derived factor 2-like protein precursor
RAP-DB (Rice) LOC_Os08g34190.1 : stromal cell-derived factor 2-like protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a031168 , Zm00025a005852
Brachypodium KQJ98436
Barley -
Wheat TraesCS7B02G063900 , TraesCS7A02G159300 , TraesCS7A02G159300 , TraesCS7D02G160300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G050700 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
2 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
3 Sobic.001G347700 protein phosphotase protein, putative, expressed -
4 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
5 Sobic.003G346500 similar to Nuclear transcription factor Y subunit B-3(PubMedID : 29862293)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08065: NFYB, nuclear transcription Y subunit beta
6 Sobic.010G028400 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
7 Sobic.001G485300 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
8 Sobic.010G069500 zinc ion binding protein, putative, expressed -
9 Sobic.004G011700 DnaK family protein, putative, expressed K09490: HSPA5, endoplasmic reticulum chaperone BiP
10 Sobic.001G025700 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
11 Sobic.007G208000 geranylgeranyl transferase type-2 subunit beta, putative, expressed K05956: geranylgeranyl transferase type-2 subunit beta
12 Sobic.004G040700 expressed protein -
13 Sobic.002G186500 UPF0041 domain containing protein, putative, expressed -
14 Sobic.007G148400 cyclin-dependent kinase C-3, putative, expressed K08819: cyclin-dependent kinase 12/13
15 Sobic.003G404100 CBS domain-containing protein, putative, expressed -
16 Sobic.002G280900 la domain containing protein, putative, expressed K18757: la-related protein 1
17 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
18 Sobic.008G013200 expressed protein -
19 Sobic.003G396800 expressed protein K17413: small subunit ribosomal protein S35
20 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase


Gene co-expression network
sample Sobic007G140600 Sobic007G140600 Sobic008G050700 Sobic008G050700 Sobic007G140600--Sobic008G050700 Sobic003G308300 Sobic003G308300 Sobic007G140600--Sobic003G308300 Sobic001G347700 Sobic001G347700 Sobic007G140600--Sobic001G347700 Sobic001G457000 Sobic001G457000 Sobic007G140600--Sobic001G457000 Sobic003G346500 Sobic003G346500 Sobic007G140600--Sobic003G346500 Sobic010G028400 Sobic010G028400 Sobic007G140600--Sobic010G028400 Sobic001G485300 Sobic001G485300 Sobic007G140600--Sobic001G485300 Sobic010G069500 Sobic010G069500 Sobic007G140600--Sobic010G069500 Sobic004G011700 Sobic004G011700 Sobic007G140600--Sobic004G011700 Sobic008G050700--Sobic007G140600 Sobic009G063800 Sobic009G063800 Sobic008G050700--Sobic009G063800 Sobic002G377200 Sobic002G377200 Sobic008G050700--Sobic002G377200 Sobic001G025700 Sobic001G025700 Sobic008G050700--Sobic001G025700 Sobic002G222200 Sobic002G222200 Sobic008G050700--Sobic002G222200 Sobic008G149500 Sobic008G149500 Sobic008G050700--Sobic008G149500 Sobic008G050700--Sobic010G069500 Sobic002G186500 Sobic002G186500 Sobic008G050700--Sobic002G186500 Sobic008G050700--Sobic003G308300 Sobic003G255700 Sobic003G255700 Sobic003G308300--Sobic003G255700 Sobic008G013200 Sobic008G013200 Sobic003G308300--Sobic008G013200 Sobic009G186700 Sobic009G186700 Sobic003G308300--Sobic009G186700 Sobic007G148400 Sobic007G148400 Sobic003G308300--Sobic007G148400 Sobic007G218600 Sobic007G218600 Sobic003G308300--Sobic007G218600 Sobic001G305900 Sobic001G305900 Sobic003G308300--Sobic001G305900 Sobic004G328100 Sobic004G328100 Sobic003G308300--Sobic004G328100 Sobic006G100266 Sobic006G100266 Sobic003G308300--Sobic006G100266 Sobic003G270100 Sobic003G270100 Sobic003G308300--Sobic003G270100 Sobic007G048700 Sobic007G048700 Sobic001G347700--Sobic007G048700 Sobic003G167000 Sobic003G167000 Sobic001G347700--Sobic003G167000 Sobic001G352800 Sobic001G352800 Sobic001G347700--Sobic001G352800 Sobic001G347700--Sobic001G485300 Sobic003G260600 Sobic003G260600 Sobic001G347700--Sobic003G260600 Sobic001G347700--Sobic010G028400 Sobic002G352200 Sobic002G352200 Sobic001G347700--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic001G347700--Sobic002G217500 Sobic004G040700 Sobic004G040700 Sobic001G347700--Sobic004G040700 Sobic007G119600 Sobic007G119600 Sobic001G457000--Sobic007G119600 Sobic004G093600 Sobic004G093600 Sobic001G457000--Sobic004G093600 Sobic004G218600 Sobic004G218600 Sobic001G457000--Sobic004G218600 Sobic009G259200 Sobic009G259200 Sobic001G457000--Sobic009G259200 Sobic009G224400 Sobic009G224400 Sobic001G457000--Sobic009G224400 Sobic003G034900 Sobic003G034900 Sobic001G457000--Sobic003G034900 Sobic001G387200 Sobic001G387200 Sobic001G457000--Sobic001G387200 Sobic010G032600 Sobic010G032600 Sobic001G457000--Sobic010G032600 Sobic007G171500 Sobic007G171500 Sobic001G457000--Sobic007G171500 Sobic004G101500 Sobic004G101500 Sobic003G346500--Sobic004G101500 Sobic004G186300 Sobic004G186300 Sobic003G346500--Sobic004G186300 Sobic010G253400 Sobic010G253400 Sobic003G346500--Sobic010G253400 Sobic006G222500 Sobic006G222500 Sobic003G346500--Sobic006G222500 Sobic008G140400 Sobic008G140400 Sobic003G346500--Sobic008G140400 Sobic003G346500--Sobic007G148400 Sobic003G346500--Sobic003G270100 Sobic003G346500--Sobic007G140600 Sobic001G408400 Sobic001G408400 Sobic003G346500--Sobic001G408400 Sobic001G343000 Sobic001G343000 Sobic010G028400--Sobic001G343000 Sobic010G028400--Sobic001G347700 Sobic010G028400--Sobic003G167000 Sobic007G208000 Sobic007G208000 Sobic010G028400--Sobic007G208000 Sobic010G028400--Sobic007G048700 Sobic007G201000 Sobic007G201000 Sobic010G028400--Sobic007G201000 Sobic004G017900 Sobic004G017900 Sobic010G028400--Sobic004G017900 Sobic001G188000 Sobic001G188000 Sobic010G028400--Sobic001G188000 Sobic010G028400--Sobic003G260600 Sobic002G348400 Sobic002G348400 Sobic001G485300--Sobic002G348400 Sobic003G085500 Sobic003G085500 Sobic001G485300--Sobic003G085500 Sobic002G276800 Sobic002G276800 Sobic001G485300--Sobic002G276800 Sobic006G041800 Sobic006G041800 Sobic001G485300--Sobic006G041800 Sobic003G190600 Sobic003G190600 Sobic001G485300--Sobic003G190600 Sobic002G392400 Sobic002G392400 Sobic001G485300--Sobic002G392400 Sobic004G054700 Sobic004G054700 Sobic001G485300--Sobic004G054700 Sobic001G485300--Sobic001G347700 Sobic001G485300--Sobic001G352800 Sobic010G069500--Sobic001G188000 Sobic010G069500--Sobic004G328100 Sobic010G069500--Sobic003G308300 Sobic004G329201 Sobic004G329201 Sobic010G069500--Sobic004G329201 Sobic002G304500 Sobic002G304500 Sobic010G069500--Sobic002G304500 Sobic002G377900 Sobic002G377900 Sobic010G069500--Sobic002G377900 Sobic010G069500--Sobic003G255700 Sobic010G153400 Sobic010G153400 Sobic010G069500--Sobic010G153400 Sobic001G306800 Sobic001G306800 Sobic010G069500--Sobic001G306800 Sobic004G011700--Sobic002G222200 Sobic008G018200 Sobic008G018200 Sobic004G011700--Sobic008G018200 Sobic001G309200 Sobic001G309200 Sobic004G011700--Sobic001G309200 Sobic003G201500 Sobic003G201500 Sobic004G011700--Sobic003G201500 Sobic004G011700--Sobic003G308300 Sobic003G404100 Sobic003G404100 Sobic004G011700--Sobic003G404100 Sobic001G282200 Sobic001G282200 Sobic004G011700--Sobic001G282200 Sobic008G011800 Sobic008G011800 Sobic004G011700--Sobic008G011800 Sobic004G100100 Sobic004G100100 Sobic004G011700--Sobic004G100100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.