Gene annotation
Transcriptome id Sobic.004G040700.1,Sobic.004G040700.2
Synonym Sb04g003530
Functional annotation expressed protein
UniProt C5XUN6 , A0A1Z5RKT9
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G26020 : -
RAP-DB (Rice) LOC_Os02g05520.1 : expressed protein
MaizeGDB (Corn) Zm00025a018996
Brachypodium PNT65873
Barley HORVU6Hr1G021610.16 , HORVU6Hr1G021610.10 , HORVU6Hr1G021610.11 , HORVU6Hr1G021610.9 , HORVU6Hr1G021610.3
Wheat TraesCS6B02G146900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G347700 protein phosphotase protein, putative, expressed -
2 Sobic.001G485300 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
3 Sobic.009G218000 VIP1 protein, putative, expressed -
4 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
5 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
6 Sobic.003G167000 protein phosphotase protein, putative, expressed -
7 Sobic.007G022700 proteasome subunit, putative, expressed K12177: COPS3, COP9 signalosome complex subunit 3
8 Sobic.002G217500 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
9 Sobic.007G208000 geranylgeranyl transferase type-2 subunit beta, putative, expressed K05956: geranylgeranyl transferase type-2 subunit beta
10 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
11 Sobic.003G372200 AGC_AGC_other_PDK1_Pk61C.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed K06276: 3-phosphoinositide dependent protein kinase-1
12 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
13 Sobic.003G404100 CBS domain-containing protein, putative, expressed -
14 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
15 Sobic.004G218600 succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed K01900: succinyl-CoA synthetase beta subunit
16 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
17 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
18 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
19 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
20 Sobic.007G003100 transmembrane protein 18, putative, expressed -


Gene co-expression network
sample Sobic004G040700 Sobic004G040700 Sobic001G347700 Sobic001G347700 Sobic004G040700--Sobic001G347700 Sobic001G485300 Sobic001G485300 Sobic004G040700--Sobic001G485300 Sobic009G218000 Sobic009G218000 Sobic004G040700--Sobic009G218000 Sobic001G352800 Sobic001G352800 Sobic004G040700--Sobic001G352800 Sobic007G119600 Sobic007G119600 Sobic004G040700--Sobic007G119600 Sobic003G167000 Sobic003G167000 Sobic004G040700--Sobic003G167000 Sobic007G022700 Sobic007G022700 Sobic004G040700--Sobic007G022700 Sobic002G217500 Sobic002G217500 Sobic004G040700--Sobic002G217500 Sobic007G208000 Sobic007G208000 Sobic004G040700--Sobic007G208000 Sobic007G048700 Sobic007G048700 Sobic001G347700--Sobic007G048700 Sobic001G347700--Sobic003G167000 Sobic001G347700--Sobic001G352800 Sobic001G347700--Sobic001G485300 Sobic003G260600 Sobic003G260600 Sobic001G347700--Sobic003G260600 Sobic010G028400 Sobic010G028400 Sobic001G347700--Sobic010G028400 Sobic002G352200 Sobic002G352200 Sobic001G347700--Sobic002G352200 Sobic001G347700--Sobic002G217500 Sobic001G347700--Sobic004G040700 Sobic002G348400 Sobic002G348400 Sobic001G485300--Sobic002G348400 Sobic003G085500 Sobic003G085500 Sobic001G485300--Sobic003G085500 Sobic002G276800 Sobic002G276800 Sobic001G485300--Sobic002G276800 Sobic006G041800 Sobic006G041800 Sobic001G485300--Sobic006G041800 Sobic003G190600 Sobic003G190600 Sobic001G485300--Sobic003G190600 Sobic002G392400 Sobic002G392400 Sobic001G485300--Sobic002G392400 Sobic004G054700 Sobic004G054700 Sobic001G485300--Sobic004G054700 Sobic001G485300--Sobic001G347700 Sobic001G485300--Sobic001G352800 Sobic006G153200 Sobic006G153200 Sobic009G218000--Sobic006G153200 Sobic001G309200 Sobic001G309200 Sobic009G218000--Sobic001G309200 Sobic009G218000--Sobic003G167000 Sobic009G218000--Sobic002G217500 Sobic002G422400 Sobic002G422400 Sobic009G218000--Sobic002G422400 Sobic009G218000--Sobic001G352800 Sobic009G218000--Sobic001G485300 Sobic001G155200 Sobic001G155200 Sobic009G218000--Sobic001G155200 Sobic008G011800 Sobic008G011800 Sobic009G218000--Sobic008G011800 Sobic001G219800 Sobic001G219800 Sobic001G352800--Sobic001G219800 Sobic002G232400 Sobic002G232400 Sobic001G352800--Sobic002G232400 Sobic002G255400 Sobic002G255400 Sobic001G352800--Sobic002G255400 Sobic001G352800--Sobic003G260600 Sobic003G075200 Sobic003G075200 Sobic001G352800--Sobic003G075200 Sobic001G352800--Sobic003G085500 Sobic002G090500 Sobic002G090500 Sobic001G352800--Sobic002G090500 Sobic001G192700 Sobic001G192700 Sobic001G352800--Sobic001G192700 Sobic001G126800 Sobic001G126800 Sobic001G352800--Sobic001G126800 Sobic009G224400 Sobic009G224400 Sobic007G119600--Sobic009G224400 Sobic009G191400 Sobic009G191400 Sobic007G119600--Sobic009G191400 Sobic007G119600--Sobic006G041800 Sobic001G457000 Sobic001G457000 Sobic007G119600--Sobic001G457000 Sobic001G073600 Sobic001G073600 Sobic007G119600--Sobic001G073600 Sobic007G119600--Sobic002G255400 Sobic003G028200 Sobic003G028200 Sobic007G119600--Sobic003G028200 Sobic003G388700 Sobic003G388700 Sobic007G119600--Sobic003G388700 Sobic007G119600--Sobic003G260600 Sobic003G167000--Sobic007G048700 Sobic003G167000--Sobic001G347700 Sobic001G013200 Sobic001G013200 Sobic003G167000--Sobic001G013200 Sobic007G003100 Sobic007G003100 Sobic003G167000--Sobic007G003100 Sobic003G167000--Sobic009G218000 Sobic003G274200 Sobic003G274200 Sobic003G167000--Sobic003G274200 Sobic003G113400 Sobic003G113400 Sobic003G167000--Sobic003G113400 Sobic003G167000--Sobic003G190600 Sobic003G167000--Sobic006G153200 Sobic004G256300 Sobic004G256300 Sobic007G022700--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic007G022700--Sobic003G222700 Sobic007G022700--Sobic003G085500 Sobic007G022700--Sobic002G232400 Sobic009G207200 Sobic009G207200 Sobic007G022700--Sobic009G207200 Sobic004G186100 Sobic004G186100 Sobic007G022700--Sobic004G186100 Sobic001G191900 Sobic001G191900 Sobic007G022700--Sobic001G191900 Sobic006G259900 Sobic006G259900 Sobic007G022700--Sobic006G259900 Sobic003G005900 Sobic003G005900 Sobic007G022700--Sobic003G005900 Sobic003G016300 Sobic003G016300 Sobic002G217500--Sobic003G016300 Sobic002G217500--Sobic002G352200 Sobic002G217500--Sobic002G255400 Sobic002G217500--Sobic006G153200 Sobic002G217500--Sobic001G219800 Sobic008G018300 Sobic008G018300 Sobic002G217500--Sobic008G018300 Sobic002G217500--Sobic003G260600 Sobic007G023400 Sobic007G023400 Sobic002G217500--Sobic007G023400 Sobic002G217500--Sobic009G218000 Sobic004G060300 Sobic004G060300 Sobic007G208000--Sobic004G060300 Sobic010G192600 Sobic010G192600 Sobic007G208000--Sobic010G192600 Sobic008G018500 Sobic008G018500 Sobic007G208000--Sobic008G018500 Sobic010G250000 Sobic010G250000 Sobic007G208000--Sobic010G250000 Sobic002G029300 Sobic002G029300 Sobic007G208000--Sobic002G029300 Sobic001G455000 Sobic001G455000 Sobic007G208000--Sobic001G455000 Sobic007G208000--Sobic003G005900 Sobic001G358500 Sobic001G358500 Sobic007G208000--Sobic001G358500 Sobic007G208000--Sobic010G028400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.