Gene annotation
Transcriptome id Sobic.002G129200.1
Synonym NRPE6A, NRPB6A, Sb02g011150, NRPD6A
Functional annotation DNA-directed RNA polymerase subunit, putative, expressed
UniProt C5X5S2
Pfam PF01192
Panther DB PTHR10773
NCBI CDD KOG3405; RNA polymerase subunit K
KEGG Orthology K03014; RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G51940 : RNA polymerase Rpb6
RAP-DB (Rice) LOC_Os03g38960.1 : DNA-directed RNA polymerase subunit, putative, expressed
MaizeGDB (Corn) Zm00025a017352
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G129200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
2 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
3 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
4 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
5 Sobic.003G436500 ubiquitin-fold modifier 1 precursor, putative, expressed K12162: ubiquitin-fold modifier 1
6 Sobic.001G382200 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
7 Sobic.004G010700 expressed protein -
8 Sobic.002G083800 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
9 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
10 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
11 Sobic.009G258600 LSM domain containing protein, expressed K12627: U6 snRNA-associated Sm-like protein LSm8
12 Sobic.004G242100 expressed protein -
13 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind
14 Sobic.008G111700 expressed protein -
15 Sobic.008G162000 rhodanese-like domain containing protein, putative, expressed K01011: TST, MPST, thiosulfate/3-mercaptopyruvate sulfurtransferase
16 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
17 Sobic.007G123900 WD-40 repeat family protein, putative, expressed -
18 Sobic.004G023900 3-isopropylmalate dehydratase large subunit 2, putative, expressed K01703: leuC, 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit
19 Sobic.010G163100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
20 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I


Gene co-expression network
sample Sobic002G129200 Sobic002G129200 Sobic003G031200 Sobic003G031200 Sobic002G129200--Sobic003G031200 Sobic010G220900 Sobic010G220900 Sobic002G129200--Sobic010G220900 Sobic002G359900 Sobic002G359900 Sobic002G129200--Sobic002G359900 Sobic006G011000 Sobic006G011000 Sobic002G129200--Sobic006G011000 Sobic003G436500 Sobic003G436500 Sobic002G129200--Sobic003G436500 Sobic001G382200 Sobic001G382200 Sobic002G129200--Sobic001G382200 Sobic004G010700 Sobic004G010700 Sobic002G129200--Sobic004G010700 Sobic002G083800 Sobic002G083800 Sobic002G129200--Sobic002G083800 Sobic009G201800 Sobic009G201800 Sobic002G129200--Sobic009G201800 Sobic010G088300 Sobic010G088300 Sobic003G031200--Sobic010G088300 Sobic004G242100 Sobic004G242100 Sobic003G031200--Sobic004G242100 Sobic003G031200--Sobic002G359900 Sobic008G111700 Sobic008G111700 Sobic003G031200--Sobic008G111700 Sobic003G031200--Sobic002G129200 Sobic002G044000 Sobic002G044000 Sobic003G031200--Sobic002G044000 Sobic003G043400 Sobic003G043400 Sobic003G031200--Sobic003G043400 Sobic001G402600 Sobic001G402600 Sobic003G031200--Sobic001G402600 Sobic001G285300 Sobic001G285300 Sobic003G031200--Sobic001G285300 Sobic006G087100 Sobic006G087100 Sobic010G220900--Sobic006G087100 Sobic004G019600 Sobic004G019600 Sobic010G220900--Sobic004G019600 Sobic009G258400 Sobic009G258400 Sobic010G220900--Sobic009G258400 Sobic001G532100 Sobic001G532100 Sobic010G220900--Sobic001G532100 Sobic010G220900--Sobic009G201800 Sobic009G212300 Sobic009G212300 Sobic010G220900--Sobic009G212300 Sobic004G249300 Sobic004G249300 Sobic010G220900--Sobic004G249300 Sobic008G118500 Sobic008G118500 Sobic010G220900--Sobic008G118500 Sobic001G469200 Sobic001G469200 Sobic010G220900--Sobic001G469200 Sobic010G253100 Sobic010G253100 Sobic002G359900--Sobic010G253100 Sobic002G359900--Sobic003G436500 Sobic006G261100 Sobic006G261100 Sobic002G359900--Sobic006G261100 Sobic006G120800 Sobic006G120800 Sobic002G359900--Sobic006G120800 Sobic002G359900--Sobic003G031200 Sobic001G458200 Sobic001G458200 Sobic002G359900--Sobic001G458200 Sobic002G403200 Sobic002G403200 Sobic002G359900--Sobic002G403200 Sobic001G038100 Sobic001G038100 Sobic002G359900--Sobic001G038100 Sobic002G204000 Sobic002G204000 Sobic002G359900--Sobic002G204000 Sobic006G094600 Sobic006G094600 Sobic006G011000--Sobic006G094600 Sobic001G329300 Sobic001G329300 Sobic006G011000--Sobic001G329300 Sobic006G011000--Sobic002G204000 Sobic008G137600 Sobic008G137600 Sobic006G011000--Sobic008G137600 Sobic001G147100 Sobic001G147100 Sobic006G011000--Sobic001G147100 Sobic006G109700 Sobic006G109700 Sobic006G011000--Sobic006G109700 Sobic006G011000--Sobic001G532100 Sobic010G163100 Sobic010G163100 Sobic006G011000--Sobic010G163100 Sobic003G402600 Sobic003G402600 Sobic006G011000--Sobic003G402600 Sobic003G436500--Sobic002G359900 Sobic003G436500--Sobic003G031200 Sobic002G400400 Sobic002G400400 Sobic003G436500--Sobic002G400400 Sobic003G436500--Sobic001G147100 Sobic005G187500 Sobic005G187500 Sobic003G436500--Sobic005G187500 Sobic003G436500--Sobic010G253100 Sobic004G028800 Sobic004G028800 Sobic003G436500--Sobic004G028800 Sobic008G160500 Sobic008G160500 Sobic003G436500--Sobic008G160500 Sobic003G436500--Sobic002G129200 Sobic009G258500 Sobic009G258500 Sobic001G382200--Sobic009G258500 Sobic001G382200--Sobic009G201800 Sobic003G118400 Sobic003G118400 Sobic001G382200--Sobic003G118400 Sobic002G341800 Sobic002G341800 Sobic001G382200--Sobic002G341800 Sobic009G234400 Sobic009G234400 Sobic001G382200--Sobic009G234400 Sobic002G394600 Sobic002G394600 Sobic001G382200--Sobic002G394600 Sobic008G016100 Sobic008G016100 Sobic001G382200--Sobic008G016100 Sobic001G382200--Sobic004G010700 Sobic001G530800 Sobic001G530800 Sobic001G382200--Sobic001G530800 Sobic004G010700--Sobic009G201800 Sobic004G010700--Sobic009G258500 Sobic002G054000 Sobic002G054000 Sobic004G010700--Sobic002G054000 Sobic002G101000 Sobic002G101000 Sobic004G010700--Sobic002G101000 Sobic002G277200 Sobic002G277200 Sobic004G010700--Sobic002G277200 Sobic006G129900 Sobic006G129900 Sobic004G010700--Sobic006G129900 Sobic004G010700--Sobic001G382200 Sobic004G010700--Sobic009G234400 Sobic009G104100 Sobic009G104100 Sobic004G010700--Sobic009G104100 Sobic004G288100 Sobic004G288100 Sobic002G083800--Sobic004G288100 Sobic002G083800--Sobic002G129200 Sobic003G280300 Sobic003G280300 Sobic002G083800--Sobic003G280300 Sobic001G465300 Sobic001G465300 Sobic002G083800--Sobic001G465300 Sobic002G083800--Sobic003G031200 Sobic003G186700 Sobic003G186700 Sobic002G083800--Sobic003G186700 Sobic004G069500 Sobic004G069500 Sobic002G083800--Sobic004G069500 Sobic002G329700 Sobic002G329700 Sobic002G083800--Sobic002G329700 Sobic001G052900 Sobic001G052900 Sobic002G083800--Sobic001G052900 Sobic009G201800--Sobic002G044000 Sobic009G201800--Sobic004G010700 Sobic009G201800--Sobic004G249300 Sobic009G201800--Sobic001G382200 Sobic009G201800--Sobic009G258500 Sobic009G201800--Sobic009G212300 Sobic009G201800--Sobic001G285300 Sobic009G201800--Sobic009G234400 Sobic003G028100 Sobic003G028100 Sobic009G201800--Sobic003G028100
Octagon: transcription factors


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