Gene annotation
Transcriptome id Sobic.004G023900.1
Synonym IIL1, Sb04g002120, ATLEUC1
Functional annotation 3-isopropylmalate dehydratase large subunit 2, putative, expressed
UniProt C5XT62
Pfam PF00330
Panther DB PTHR11670
NCBI CDD -
KEGG Orthology K01703; leuC, 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit
Gene Ontology GO:0008152; metabolic process


Orthologs (automatic annotation)
TAIR AT4G13430 : isopropyl malate isomerase large subunit 1
RAP-DB (Rice) LOC_Os02g03260.1 : 3-isopropylmalate dehydratase large subunit 2, putative, expressed
MaizeGDB (Corn) Zm00025a034951 , Zm00025a034952 , Zm00025a034957 , Zm00025a058050 , Zm00025a034969 , Zm00025a018792
Brachypodium KQJ93057
Barley HORVU6Hr1G013950.9 , HORVU6Hr1G013950.8 , HORVU6Hr1G013950.6 , HORVU6Hr1G013950.7 , HORVU6Hr1G013950.4 , HORVU6Hr1G013950.5 , HORVU6Hr1G013950.2 , HORVU6Hr1G013950.3 , HORVU6Hr1G013950.1
Wheat TraesCS6A02G080600 , TraesCS6D02G074300 , TraesCS6B02G108100 , TraesCS6B02G108100 , TraesCS2B02G181900
Populus PNT25193


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cDNA sequences
Sobic.004G023900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G190500 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
2 Sobic.001G039500 protein kinase domain containing protein, expressed -
3 Sobic.009G127300 pentatricopeptide repeat-containing protein, putative, expressed -
4 Sobic.006G245100 Ca exchanger(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
5 Sobic.004G018000 bifunctional protein folD, putative, expressed -
6 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.002G390300 heat shock protein DnaJ, putative, expressed -
8 Sobic.001G008700 DUF565 domain containing protein, putative, expressed -
9 Sobic.002G119400 protein kinase, putative, expressed K13436: pto-interacting protein 1
10 Sobic.007G217600 pentatricopeptide, putative, expressed -
11 Sobic.003G384300 NADP-dependent oxidoreductase, putative, expressed -
12 Sobic.002G129200 DNA-directed RNA polymerase subunit, putative, expressed K03014: RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2
13 Sobic.001G175600 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
14 Sobic.010G024100 tRNA 2-phosphotransferase 1, putative, expressed K10669: TRPT1, 2'-phosphotransferase
15 Sobic.007G123900 WD-40 repeat family protein, putative, expressed -
16 Sobic.003G436500 ubiquitin-fold modifier 1 precursor, putative, expressed K12162: ubiquitin-fold modifier 1
17 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind
18 Sobic.010G015900 transcriptional corepressor SEUSS, putative, expressed -
19 Sobic.006G186800 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K12345: 3-oxo-5-alpha-steroid 4-dehydrogenase 3 / polyprenol reductase
20 Sobic.006G168400 ethylene-responsive element-binding protein, putative, expressed -


Gene co-expression network
sample Sobic004G023900 Sobic004G023900 Sobic003G190500 Sobic003G190500 Sobic004G023900--Sobic003G190500 Sobic001G039500 Sobic001G039500 Sobic004G023900--Sobic001G039500 Sobic009G127300 Sobic009G127300 Sobic004G023900--Sobic009G127300 Sobic006G245100 Sobic006G245100 Sobic004G023900--Sobic006G245100 Sobic004G018000 Sobic004G018000 Sobic004G023900--Sobic004G018000 Sobic003G159500 Sobic003G159500 Sobic004G023900--Sobic003G159500 Sobic002G390300 Sobic002G390300 Sobic004G023900--Sobic002G390300 Sobic001G008700 Sobic001G008700 Sobic004G023900--Sobic001G008700 Sobic002G119400 Sobic002G119400 Sobic004G023900--Sobic002G119400 Sobic010G108900 Sobic010G108900 Sobic003G190500--Sobic010G108900 Sobic003G190500--Sobic004G023900 Sobic007G171950 Sobic007G171950 Sobic003G190500--Sobic007G171950 Sobic003G190500--Sobic004G018000 Sobic009G108500 Sobic009G108500 Sobic003G190500--Sobic009G108500 Sobic002G242200 Sobic002G242200 Sobic003G190500--Sobic002G242200 Sobic003G279200 Sobic003G279200 Sobic003G190500--Sobic003G279200 Sobic001G296900 Sobic001G296900 Sobic003G190500--Sobic001G296900 Sobic006G168400 Sobic006G168400 Sobic003G190500--Sobic006G168400 Sobic010G015900 Sobic010G015900 Sobic001G039500--Sobic010G015900 Sobic001G039500--Sobic004G023900 Sobic002G400400 Sobic002G400400 Sobic001G039500--Sobic002G400400 Sobic001G039500--Sobic003G159500 Sobic001G039500--Sobic006G245100 Sobic008G115000 Sobic008G115000 Sobic001G039500--Sobic008G115000 Sobic007G041300 Sobic007G041300 Sobic001G039500--Sobic007G041300 Sobic006G120800 Sobic006G120800 Sobic001G039500--Sobic006G120800 Sobic001G033400 Sobic001G033400 Sobic001G039500--Sobic001G033400 Sobic001G011800 Sobic001G011800 Sobic009G127300--Sobic001G011800 Sobic003G436500 Sobic003G436500 Sobic009G127300--Sobic003G436500 Sobic009G127300--Sobic004G023900 Sobic006G276200 Sobic006G276200 Sobic009G127300--Sobic006G276200 Sobic001G147100 Sobic001G147100 Sobic009G127300--Sobic001G147100 Sobic004G028000 Sobic004G028000 Sobic009G127300--Sobic004G028000 Sobic001G218800 Sobic001G218800 Sobic009G127300--Sobic001G218800 Sobic002G037800 Sobic002G037800 Sobic009G127300--Sobic002G037800 Sobic001G012100 Sobic001G012100 Sobic009G127300--Sobic001G012100 Sobic001G534600 Sobic001G534600 Sobic006G245100--Sobic001G534600 Sobic006G245100--Sobic002G119400 Sobic004G154300 Sobic004G154300 Sobic006G245100--Sobic004G154300 Sobic002G105200 Sobic002G105200 Sobic006G245100--Sobic002G105200 Sobic010G186600 Sobic010G186600 Sobic006G245100--Sobic010G186600 Sobic006G087100 Sobic006G087100 Sobic006G245100--Sobic006G087100 Sobic004G091200 Sobic004G091200 Sobic006G245100--Sobic004G091200 Sobic006G245100--Sobic001G039500 Sobic002G029100 Sobic002G029100 Sobic006G245100--Sobic002G029100 Sobic001G178300 Sobic001G178300 Sobic004G018000--Sobic001G178300 Sobic008G116000 Sobic008G116000 Sobic004G018000--Sobic008G116000 Sobic001G537500 Sobic001G537500 Sobic004G018000--Sobic001G537500 Sobic001G486700 Sobic001G486700 Sobic004G018000--Sobic001G486700 Sobic001G003100 Sobic001G003100 Sobic004G018000--Sobic001G003100 Sobic004G344000 Sobic004G344000 Sobic004G018000--Sobic004G344000 Sobic001G462200 Sobic001G462200 Sobic004G018000--Sobic001G462200 Sobic002G393700 Sobic002G393700 Sobic004G018000--Sobic002G393700 Sobic001G116500 Sobic001G116500 Sobic004G018000--Sobic001G116500 Sobic006G179600 Sobic006G179600 Sobic003G159500--Sobic006G179600 Sobic006G061100 Sobic006G061100 Sobic003G159500--Sobic006G061100 Sobic010G207400 Sobic010G207400 Sobic003G159500--Sobic010G207400 Sobic009G132600 Sobic009G132600 Sobic003G159500--Sobic009G132600 Sobic010G071600 Sobic010G071600 Sobic003G159500--Sobic010G071600 Sobic010G273800 Sobic010G273800 Sobic003G159500--Sobic010G273800 Sobic007G042300 Sobic007G042300 Sobic003G159500--Sobic007G042300 Sobic002G403200 Sobic002G403200 Sobic003G159500--Sobic002G403200 Sobic008G160500 Sobic008G160500 Sobic003G159500--Sobic008G160500 Sobic010G024100 Sobic010G024100 Sobic002G390300--Sobic010G024100 Sobic003G327100 Sobic003G327100 Sobic002G390300--Sobic003G327100 Sobic002G390300--Sobic004G023900 Sobic002G390300--Sobic007G171950 Sobic002G390300--Sobic003G190500 Sobic006G198500 Sobic006G198500 Sobic002G390300--Sobic006G198500 Sobic001G479200 Sobic001G479200 Sobic002G390300--Sobic001G479200 Sobic001G526600 Sobic001G526600 Sobic002G390300--Sobic001G526600 Sobic001G439600 Sobic001G439600 Sobic002G390300--Sobic001G439600 Sobic001G463500 Sobic001G463500 Sobic001G008700--Sobic001G463500 Sobic010G221600 Sobic010G221600 Sobic001G008700--Sobic010G221600 Sobic001G011300 Sobic001G011300 Sobic001G008700--Sobic001G011300 Sobic001G175600 Sobic001G175600 Sobic001G008700--Sobic001G175600 Sobic007G102700 Sobic007G102700 Sobic001G008700--Sobic007G102700 Sobic001G008700--Sobic004G023900 Sobic005G046900 Sobic005G046900 Sobic001G008700--Sobic005G046900 Sobic001G008700--Sobic010G108900 Sobic001G008700--Sobic006G168400 Sobic004G311900 Sobic004G311900 Sobic002G119400--Sobic004G311900 Sobic002G119400--Sobic010G186600 Sobic001G168900 Sobic001G168900 Sobic002G119400--Sobic001G168900 Sobic004G353000 Sobic004G353000 Sobic002G119400--Sobic004G353000 Sobic009G050700 Sobic009G050700 Sobic002G119400--Sobic009G050700 Sobic004G176400 Sobic004G176400 Sobic002G119400--Sobic004G176400 Sobic006G186800 Sobic006G186800 Sobic002G119400--Sobic006G186800 Sobic006G250300 Sobic006G250300 Sobic002G119400--Sobic006G250300 Sobic009G258400 Sobic009G258400 Sobic002G119400--Sobic009G258400
Octagon: transcription factors


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