Gene annotation
Transcriptome id Sobic.009G127300.1
Synonym Sb09g019460
Functional annotation pentatricopeptide repeat-containing protein, putative, expressed
UniProt A0A1B6P849
Pfam -
Panther DB PTHR10759 PTHR10759:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G06180 : Ribosomal protein L34e superfamily protein
RAP-DB (Rice) LOC_Os05g32670.1 : pentatricopeptide repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a043604 , Zm00025a037641
Brachypodium KQK06457 , KQK06458
Barley HORVU1Hr1G062810.4 , HORVU1Hr1G062810.1 , HORVU1Hr1G062810.2 , HORVU1Hr1G062810.3
Wheat TraesCS1A02G246700 , TraesCS1D02G246000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G127300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G011800 SAM domain containing protein, putative, expressed -
2 Sobic.003G436500 ubiquitin-fold modifier 1 precursor, putative, expressed K12162: ubiquitin-fold modifier 1
3 Sobic.004G023900 3-isopropylmalate dehydratase large subunit 2, putative, expressed K01703: leuC, 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit
4 Sobic.006G276200 F-box domain containing protein, expressed -
5 Sobic.001G147100 pre-rRNA-processing protein TSR2, putative, expressed K14800: pre-rRNA-processing protein TSR2
6 Sobic.004G028000 expressed protein -
7 Sobic.001G218800 expressed protein -
8 Sobic.002G037800 FAD dependent oxidoreductase domain containing protein, expressed -
9 Sobic.001G012100 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed -
10 Sobic.003G333900 pentatricopeptide repeat-containing protein, putative, expressed -
11 Sobic.001G434400 ufm1-conjugating enzyme 1, putative, expressed K12165: ufm1-conjugating enzyme 1
12 Sobic.002G117200 B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
13 Sobic.006G168400 ethylene-responsive element-binding protein, putative, expressed -
14 Sobic.007G128500 expressed protein -
15 Sobic.009G150700 expressed protein -
16 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
17 Sobic.003G265400 threonine synthase, chloroplast precursor, putative, expressed K01733: threonine synthase
18 Sobic.004G015400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed -
19 Sobic.001G418800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-acetylglucosaminyltransferase, putative, expressed -
20 Sobic.003G117300 LSM domain containing protein, expressed K12623: U6 snRNA-associated Sm-like protein LSm4


Gene co-expression network
sample Sobic009G127300 Sobic009G127300 Sobic001G011800 Sobic001G011800 Sobic009G127300--Sobic001G011800 Sobic003G436500 Sobic003G436500 Sobic009G127300--Sobic003G436500 Sobic004G023900 Sobic004G023900 Sobic009G127300--Sobic004G023900 Sobic006G276200 Sobic006G276200 Sobic009G127300--Sobic006G276200 Sobic001G147100 Sobic001G147100 Sobic009G127300--Sobic001G147100 Sobic004G028000 Sobic004G028000 Sobic009G127300--Sobic004G028000 Sobic001G218800 Sobic001G218800 Sobic009G127300--Sobic001G218800 Sobic002G037800 Sobic002G037800 Sobic009G127300--Sobic002G037800 Sobic001G012100 Sobic001G012100 Sobic009G127300--Sobic001G012100 Sobic001G011800--Sobic009G127300 Sobic007G181600 Sobic007G181600 Sobic001G011800--Sobic007G181600 Sobic007G050300 Sobic007G050300 Sobic001G011800--Sobic007G050300 Sobic004G298700 Sobic004G298700 Sobic001G011800--Sobic004G298700 Sobic010G079800 Sobic010G079800 Sobic001G011800--Sobic010G079800 Sobic006G094500 Sobic006G094500 Sobic001G011800--Sobic006G094500 Sobic002G400400 Sobic002G400400 Sobic001G011800--Sobic002G400400 Sobic001G011800--Sobic006G276200 Sobic001G011800--Sobic003G436500 Sobic002G359900 Sobic002G359900 Sobic003G436500--Sobic002G359900 Sobic003G031200 Sobic003G031200 Sobic003G436500--Sobic003G031200 Sobic003G436500--Sobic002G400400 Sobic003G436500--Sobic001G147100 Sobic005G187500 Sobic005G187500 Sobic003G436500--Sobic005G187500 Sobic010G253100 Sobic010G253100 Sobic003G436500--Sobic010G253100 Sobic004G028800 Sobic004G028800 Sobic003G436500--Sobic004G028800 Sobic008G160500 Sobic008G160500 Sobic003G436500--Sobic008G160500 Sobic002G129200 Sobic002G129200 Sobic003G436500--Sobic002G129200 Sobic003G190500 Sobic003G190500 Sobic004G023900--Sobic003G190500 Sobic001G039500 Sobic001G039500 Sobic004G023900--Sobic001G039500 Sobic004G023900--Sobic009G127300 Sobic006G245100 Sobic006G245100 Sobic004G023900--Sobic006G245100 Sobic004G018000 Sobic004G018000 Sobic004G023900--Sobic004G018000 Sobic003G159500 Sobic003G159500 Sobic004G023900--Sobic003G159500 Sobic002G390300 Sobic002G390300 Sobic004G023900--Sobic002G390300 Sobic001G008700 Sobic001G008700 Sobic004G023900--Sobic001G008700 Sobic002G119400 Sobic002G119400 Sobic004G023900--Sobic002G119400 Sobic001G434400 Sobic001G434400 Sobic006G276200--Sobic001G434400 Sobic001G544100 Sobic001G544100 Sobic006G276200--Sobic001G544100 Sobic010G088300 Sobic010G088300 Sobic006G276200--Sobic010G088300 Sobic002G279000 Sobic002G279000 Sobic006G276200--Sobic002G279000 Sobic004G242100 Sobic004G242100 Sobic006G276200--Sobic004G242100 Sobic001G136500 Sobic001G136500 Sobic006G276200--Sobic001G136500 Sobic003G003000 Sobic003G003000 Sobic006G276200--Sobic003G003000 Sobic001G199300 Sobic001G199300 Sobic006G276200--Sobic001G199300 Sobic007G043600 Sobic007G043600 Sobic006G276200--Sobic007G043600 Sobic003G424800 Sobic003G424800 Sobic001G147100--Sobic003G424800 Sobic001G404100 Sobic001G404100 Sobic001G147100--Sobic001G404100 Sobic006G011000 Sobic006G011000 Sobic001G147100--Sobic006G011000 Sobic009G187300 Sobic009G187300 Sobic001G147100--Sobic009G187300 Sobic002G406600 Sobic002G406600 Sobic001G147100--Sobic002G406600 Sobic004G060600 Sobic004G060600 Sobic001G147100--Sobic004G060600 Sobic001G408100 Sobic001G408100 Sobic001G147100--Sobic001G408100 Sobic009G104000 Sobic009G104000 Sobic001G147100--Sobic009G104000 Sobic002G266800 Sobic002G266800 Sobic001G147100--Sobic002G266800 Sobic004G028000--Sobic004G060600 Sobic005G055000 Sobic005G055000 Sobic004G028000--Sobic005G055000 Sobic001G417900 Sobic001G417900 Sobic004G028000--Sobic001G417900 Sobic003G325500 Sobic003G325500 Sobic004G028000--Sobic003G325500 Sobic007G117500 Sobic007G117500 Sobic004G028000--Sobic007G117500 Sobic004G202700 Sobic004G202700 Sobic004G028000--Sobic004G202700 Sobic003G299000 Sobic003G299000 Sobic004G028000--Sobic003G299000 Sobic003G369500 Sobic003G369500 Sobic004G028000--Sobic003G369500 Sobic001G263000 Sobic001G263000 Sobic004G028000--Sobic001G263000 Sobic010G108900 Sobic010G108900 Sobic001G218800--Sobic010G108900 Sobic003G004700 Sobic003G004700 Sobic001G218800--Sobic003G004700 Sobic010G176500 Sobic010G176500 Sobic001G218800--Sobic010G176500 Sobic003G123000 Sobic003G123000 Sobic001G218800--Sobic003G123000 Sobic010G000300 Sobic010G000300 Sobic001G218800--Sobic010G000300 Sobic001G380500 Sobic001G380500 Sobic001G218800--Sobic001G380500 Sobic006G087100 Sobic006G087100 Sobic001G218800--Sobic006G087100 Sobic006G233300 Sobic006G233300 Sobic001G218800--Sobic006G233300 Sobic009G108500 Sobic009G108500 Sobic001G218800--Sobic009G108500 Sobic005G072200 Sobic005G072200 Sobic002G037800--Sobic005G072200 Sobic003G125400 Sobic003G125400 Sobic002G037800--Sobic003G125400 Sobic010G080300 Sobic010G080300 Sobic002G037800--Sobic010G080300 Sobic009G034600 Sobic009G034600 Sobic002G037800--Sobic009G034600 Sobic003G421400 Sobic003G421400 Sobic002G037800--Sobic003G421400 Sobic001G404500 Sobic001G404500 Sobic002G037800--Sobic001G404500 Sobic001G525900 Sobic001G525900 Sobic002G037800--Sobic001G525900 Sobic003G402200 Sobic003G402200 Sobic002G037800--Sobic003G402200 Sobic010G269400 Sobic010G269400 Sobic002G037800--Sobic010G269400 Sobic002G142066 Sobic002G142066 Sobic001G012100--Sobic002G142066 Sobic004G117800 Sobic004G117800 Sobic001G012100--Sobic004G117800 Sobic001G416300 Sobic001G416300 Sobic001G012100--Sobic001G416300 Sobic001G012100--Sobic010G080300 Sobic009G190800 Sobic009G190800 Sobic001G012100--Sobic009G190800 Sobic007G132500 Sobic007G132500 Sobic001G012100--Sobic007G132500 Sobic009G141400 Sobic009G141400 Sobic001G012100--Sobic009G141400 Sobic004G018400 Sobic004G018400 Sobic001G012100--Sobic004G018400 Sobic006G052200 Sobic006G052200 Sobic001G012100--Sobic006G052200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.