Gene annotation
Transcriptome id Sobic.004G015400.1
Synonym Sb04g001460, AAE1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
AMP-binding enzyme, putative, expressed
UniProt C5XSE2
Pfam PF13193 PF00501
Panther DB PTHR24095 PTHR24095:SF166
NCBI CDD KOG1176; Acyl-CoA synthetase
KEGG Orthology -
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G20560 : acyl activating enzyme 1
RAP-DB (Rice) LOC_Os01g24030.1 : AMP-binding enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a009318 , Zm00025a040240 , Zm00025a018738 , Zm00025a002116 , Zm00025a000470 , Zm00025a000472 , Zm00025a052585 , Zm00025a028564
Brachypodium KQJ92945 , KQK23794
Barley HORVU2Hr1G066520.2 , HORVU2Hr1G066520.1 , HORVU4Hr1G081420.2 , HORVU4Hr1G081420.1 , HORVU6Hr1G011140.13 , HORVU6Hr1G011140.14 , HORVU6Hr1G011140.1 , HORVU6Hr1G011140.4 , HORVU6Hr1G011140.9 , HORVU4Hr1G082470.1 , HORVU4Hr1G082470.2 , HORVU4Hr1G081290.4 , HORVU4Hr1G081290.5 , HORVU4Hr1G081290.1 , HORVU4Hr1G081290.2 , HORVU4Hr1G081290.3
Wheat TraesCSU02G121800 , TraesCS4D02G327100 , TraesCS5A02G501700 , TraesCS4B02G330100 , TraesCS2B02G587100 , TraesCS6A02G059400 , TraesCS4B02G330200 , TraesCS6B02G079800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G015400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G149800 subtilisin N-terminal Region family protein, expressed -
2 Sobic.006G244500 nuclease PA3, putative, expressed -
3 Sobic.004G028800 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
4 Sobic.003G316350 - -
5 Sobic.001G488200 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
6 Sobic.009G100300 expressed protein -
7 Sobic.006G151001 - -
8 Sobic.008G051400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
9 Sobic.007G181600 dehydrogenase, putative, expressed K00008: SORD, L-iditol 2-dehydrogenase
10 Sobic.003G436500 ubiquitin-fold modifier 1 precursor, putative, expressed K12162: ubiquitin-fold modifier 1
11 Sobic.001G280700 acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
12 Sobic.001G267701 - -
13 Sobic.009G127300 pentatricopeptide repeat-containing protein, putative, expressed -
14 Sobic.003G062200 transcription factor HBP-1b, putative, expressed -
15 Sobic.009G009800 expressed protein -
16 Sobic.001G351300 - -
17 Sobic.007G034600 U box protein 8, putative, expressed -
18 Sobic.001G262000 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.001G011800 SAM domain containing protein, putative, expressed -
20 Sobic.007G090442 - -


Gene co-expression network
sample Sobic004G015400 Sobic004G015400 Sobic009G149800 Sobic009G149800 Sobic004G015400--Sobic009G149800 Sobic006G244500 Sobic006G244500 Sobic004G015400--Sobic006G244500 Sobic004G028800 Sobic004G028800 Sobic004G015400--Sobic004G028800 Sobic003G316350 Sobic003G316350 Sobic004G015400--Sobic003G316350 Sobic001G488200 Sobic001G488200 Sobic004G015400--Sobic001G488200 Sobic009G100300 Sobic009G100300 Sobic004G015400--Sobic009G100300 Sobic006G151001 Sobic006G151001 Sobic004G015400--Sobic006G151001 Sobic008G051400 Sobic008G051400 Sobic004G015400--Sobic008G051400 Sobic007G181600 Sobic007G181600 Sobic004G015400--Sobic007G181600 Sobic003G024500 Sobic003G024500 Sobic009G149800--Sobic003G024500 Sobic001G148700 Sobic001G148700 Sobic009G149800--Sobic001G148700 Sobic002G378401 Sobic002G378401 Sobic009G149800--Sobic002G378401 Sobic003G403400 Sobic003G403400 Sobic009G149800--Sobic003G403400 Sobic010G217900 Sobic010G217900 Sobic009G149800--Sobic010G217900 Sobic003G063200 Sobic003G063200 Sobic009G149800--Sobic003G063200 Sobic009G149800--Sobic004G015400 Sobic008G111500 Sobic008G111500 Sobic009G149800--Sobic008G111500 Sobic004G063500 Sobic004G063500 Sobic009G149800--Sobic004G063500 Sobic009G009800 Sobic009G009800 Sobic006G244500--Sobic009G009800 Sobic003G062200 Sobic003G062200 Sobic006G244500--Sobic003G062200 Sobic003G376000 Sobic003G376000 Sobic006G244500--Sobic003G376000 Sobic005G158901 Sobic005G158901 Sobic006G244500--Sobic005G158901 Sobic006G244500--Sobic006G151001 Sobic008G037000 Sobic008G037000 Sobic006G244500--Sobic008G037000 Sobic006G096200 Sobic006G096200 Sobic006G244500--Sobic006G096200 Sobic010G031600 Sobic010G031600 Sobic006G244500--Sobic010G031600 Sobic001G277800 Sobic001G277800 Sobic006G244500--Sobic001G277800 Sobic004G028800--Sobic006G244500 Sobic004G028800--Sobic001G488200 Sobic004G028800--Sobic006G151001 Sobic004G155300 Sobic004G155300 Sobic004G028800--Sobic004G155300 Sobic004G028800--Sobic003G062200 Sobic004G345100 Sobic004G345100 Sobic004G028800--Sobic004G345100 Sobic004G028800--Sobic009G009800 Sobic002G359900 Sobic002G359900 Sobic004G028800--Sobic002G359900 Sobic006G066600 Sobic006G066600 Sobic004G028800--Sobic006G066600 Sobic003G316350--Sobic003G062200 Sobic003G316350--Sobic006G151001 Sobic003G316350--Sobic006G244500 Sobic009G041100 Sobic009G041100 Sobic003G316350--Sobic009G041100 Sobic003G316350--Sobic009G009800 Sobic003G316350--Sobic008G037000 Sobic009G041200 Sobic009G041200 Sobic003G316350--Sobic009G041200 Sobic003G316350--Sobic001G488200 Sobic003G316350--Sobic006G096200 Sobic001G488200--Sobic006G244500 Sobic001G488200--Sobic006G151001 Sobic001G488200--Sobic004G028800 Sobic001G488200--Sobic009G009800 Sobic001G488200--Sobic003G062200 Sobic006G206500 Sobic006G206500 Sobic001G488200--Sobic006G206500 Sobic001G488200--Sobic005G158901 Sobic003G421900 Sobic003G421900 Sobic001G488200--Sobic003G421900 Sobic001G488200--Sobic006G066600 Sobic002G276900 Sobic002G276900 Sobic009G100300--Sobic002G276900 Sobic007G038800 Sobic007G038800 Sobic009G100300--Sobic007G038800 Sobic009G034400 Sobic009G034400 Sobic009G100300--Sobic009G034400 Sobic009G100300--Sobic002G359900 Sobic002G068300 Sobic002G068300 Sobic009G100300--Sobic002G068300 Sobic009G036900 Sobic009G036900 Sobic009G100300--Sobic009G036900 Sobic006G099800 Sobic006G099800 Sobic009G100300--Sobic006G099800 Sobic002G121000 Sobic002G121000 Sobic009G100300--Sobic002G121000 Sobic010G253100 Sobic010G253100 Sobic009G100300--Sobic010G253100 Sobic006G151001--Sobic009G041100 Sobic006G151001--Sobic003G376000 Sobic006G151001--Sobic008G037000 Sobic006G151001--Sobic003G062200 Sobic006G151001--Sobic006G096200 Sobic009G169650 Sobic009G169650 Sobic006G151001--Sobic009G169650 Sobic006G151001--Sobic006G244500 Sobic006G151001--Sobic009G009800 Sobic010G044600 Sobic010G044600 Sobic006G151001--Sobic010G044600 Sobic007G224300 Sobic007G224300 Sobic008G051400--Sobic007G224300 Sobic006G094500 Sobic006G094500 Sobic008G051400--Sobic006G094500 Sobic008G051400--Sobic006G099800 Sobic008G051400--Sobic007G181600 Sobic001G011800 Sobic001G011800 Sobic008G051400--Sobic001G011800 Sobic008G051400--Sobic004G028800 Sobic008G051400--Sobic001G148700 Sobic008G051400--Sobic004G015400 Sobic008G051400--Sobic009G149800 Sobic004G298700 Sobic004G298700 Sobic007G181600--Sobic004G298700 Sobic007G090442 Sobic007G090442 Sobic007G181600--Sobic007G090442 Sobic006G180900 Sobic006G180900 Sobic007G181600--Sobic006G180900 Sobic001G310500 Sobic001G310500 Sobic007G181600--Sobic001G310500 Sobic008G013000 Sobic008G013000 Sobic007G181600--Sobic008G013000 Sobic010G095300 Sobic010G095300 Sobic007G181600--Sobic010G095300 Sobic003G111400 Sobic003G111400 Sobic007G181600--Sobic003G111400 Sobic001G037800 Sobic001G037800 Sobic007G181600--Sobic001G037800 Sobic007G181600--Sobic001G011800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.