Gene annotation
Transcriptome id Sobic.001G280700.2,Sobic.001G280700.3,Sobic.001G280700.1
Synonym Sb01g027610
Functional annotation acyl-desaturase, chloroplast precursor, putative, expressed
UniProt A0A1B6QLL4 , A0A1B6QLK5
Pfam PF03405
Panther DB PTHR31155
NCBI CDD -
KEGG Orthology K03921; FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
Gene Ontology GO:0006631; fatty acid metabolic process GO:0006631fatty acid metabolic process


Orthologs (automatic annotation)
TAIR AT3G02610 : Plant stearoyl-acyl-carrier-protein desaturase family protein
RAP-DB (Rice) LOC_Os01g69080.1,LOC_Os04g31070.1 : acyl-desaturase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a054837 , Zm00025a003595 , Zm00025a031382
Brachypodium KQJ95532 , KQJ90512
Barley HORVU3Hr1G092740.4 , HORVU3Hr1G092740.1 , HORVU3Hr1G092740.3 , HORVU3Hr1G092740.2 , HORVU7Hr1G040140.1 , HORVU3Hr1G061520.3 , HORVU3Hr1G061520.2 , HORVU3Hr1G061520.1 , HORVU3Hr1G061520.7 , HORVU3Hr1G061520.6 , HORVU3Hr1G061520.5 , HORVU3Hr1G061520.4 , HORVU5Hr1G068310.1 , HORVU5Hr1G068310.2
Wheat TraesCS7B02G102300 , TraesCS2A02G075300 , TraesCS7A02G196500 , TraesCS3A02G418000 , TraesCS5D02G244700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G280700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G113000 Ser/Thr protein phosphatase family protein, putative, expressed -
2 Sobic.009G154200 MYB family transcription factor, putative, expressed -
3 Sobic.009G232266 - -
4 Sobic.004G117600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY39, expressed -
5 Sobic.003G041600 DUF623 domain containing protein, expressed -
6 Sobic.006G143400 expressed protein -
7 Sobic.006G217900 Leucine-rich receptor-like protein kinase("PubMedID : 26759170,PubMedID : 24597475")@leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed K13420: LRR receptor-like serine/threonine-protein kinase FLS2
8 Sobic.001G091600 expressed protein -
9 Sobic.006G100200 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.009G069800 Hexokinase-7(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Hexokinase 1 HXK1 (Os)(PubMedID : 27208977)@hexokinase, putative, expressed K00844: hexokinase
11 Sobic.002G338250 - -
12 Sobic.002G042000 gibberellin receptor GID1L2, putative, expressed -
13 Sobic.007G074200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- -
14 Sobic.008G111500 membrane associated DUF588 domain containing protein, putative, expressed -
15 Sobic.002G393600 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.001G054500 expressed protein -
17 Sobic.003G145400 expressed protein -
18 Sobic.009G198600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.002G070200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL84 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.007G008100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -


Gene co-expression network
sample Sobic001G280700 Sobic001G280700 Sobic008G113000 Sobic008G113000 Sobic001G280700--Sobic008G113000 Sobic009G154200 Sobic009G154200 Sobic001G280700--Sobic009G154200 Sobic009G232266 Sobic009G232266 Sobic001G280700--Sobic009G232266 Sobic004G117600 Sobic004G117600 Sobic001G280700--Sobic004G117600 Sobic003G041600 Sobic003G041600 Sobic001G280700--Sobic003G041600 Sobic006G143400 Sobic006G143400 Sobic001G280700--Sobic006G143400 Sobic006G217900 Sobic006G217900 Sobic001G280700--Sobic006G217900 Sobic001G091600 Sobic001G091600 Sobic001G280700--Sobic001G091600 Sobic006G100200 Sobic006G100200 Sobic001G280700--Sobic006G100200 Sobic002G319100 Sobic002G319100 Sobic008G113000--Sobic002G319100 Sobic008G113000--Sobic003G041600 Sobic007G025500 Sobic007G025500 Sobic008G113000--Sobic007G025500 Sobic003G162700 Sobic003G162700 Sobic008G113000--Sobic003G162700 Sobic010G166500 Sobic010G166500 Sobic008G113000--Sobic010G166500 Sobic002G345850 Sobic002G345850 Sobic008G113000--Sobic002G345850 Sobic002G302500 Sobic002G302500 Sobic008G113000--Sobic002G302500 Sobic010G178200 Sobic010G178200 Sobic008G113000--Sobic010G178200 Sobic008G113000--Sobic001G091600 Sobic007G008100 Sobic007G008100 Sobic009G154200--Sobic007G008100 Sobic003G364300 Sobic003G364300 Sobic009G154200--Sobic003G364300 Sobic004G336500 Sobic004G336500 Sobic009G154200--Sobic004G336500 Sobic010G156500 Sobic010G156500 Sobic009G154200--Sobic010G156500 Sobic003G382600 Sobic003G382600 Sobic009G154200--Sobic003G382600 Sobic009G231000 Sobic009G231000 Sobic009G154200--Sobic009G231000 Sobic001G279500 Sobic001G279500 Sobic009G154200--Sobic001G279500 Sobic003G345100 Sobic003G345100 Sobic009G154200--Sobic003G345100 Sobic001G112200 Sobic001G112200 Sobic009G154200--Sobic001G112200 Sobic001G357500 Sobic001G357500 Sobic009G232266--Sobic001G357500 Sobic009G236800 Sobic009G236800 Sobic009G232266--Sobic009G236800 Sobic003G277500 Sobic003G277500 Sobic009G232266--Sobic003G277500 Sobic003G271201 Sobic003G271201 Sobic009G232266--Sobic003G271201 Sobic009G232266--Sobic008G113000 Sobic009G232266--Sobic003G041600 Sobic005G155600 Sobic005G155600 Sobic009G232266--Sobic005G155600 Sobic004G010300 Sobic004G010300 Sobic009G232266--Sobic004G010300 Sobic009G232266--Sobic010G178200 Sobic007G074200 Sobic007G074200 Sobic004G117600--Sobic007G074200 Sobic002G338250 Sobic002G338250 Sobic004G117600--Sobic002G338250 Sobic004G117600--Sobic009G154200 Sobic008G111500 Sobic008G111500 Sobic004G117600--Sobic008G111500 Sobic002G393600 Sobic002G393600 Sobic004G117600--Sobic002G393600 Sobic009G159400 Sobic009G159400 Sobic004G117600--Sobic009G159400 Sobic004G301300 Sobic004G301300 Sobic004G117600--Sobic004G301300 Sobic002G239200 Sobic002G239200 Sobic004G117600--Sobic002G239200 Sobic006G136800 Sobic006G136800 Sobic004G117600--Sobic006G136800 Sobic009G221400 Sobic009G221400 Sobic003G041600--Sobic009G221400 Sobic008G044300 Sobic008G044300 Sobic003G041600--Sobic008G044300 Sobic003G041600--Sobic006G143400 Sobic009G069800 Sobic009G069800 Sobic003G041600--Sobic009G069800 Sobic003G041600--Sobic003G364300 Sobic003G041600--Sobic001G091600 Sobic003G041600--Sobic010G166500 Sobic001G477600 Sobic001G477600 Sobic003G041600--Sobic001G477600 Sobic003G041600--Sobic010G156500 Sobic005G005600 Sobic005G005600 Sobic006G143400--Sobic005G005600 Sobic006G143400--Sobic003G041600 Sobic006G143400--Sobic009G159400 Sobic010G259600 Sobic010G259600 Sobic006G143400--Sobic010G259600 Sobic008G185400 Sobic008G185400 Sobic006G143400--Sobic008G185400 Sobic004G075000 Sobic004G075000 Sobic006G143400--Sobic004G075000 Sobic006G143400--Sobic003G364300 Sobic007G166000 Sobic007G166000 Sobic006G143400--Sobic007G166000 Sobic001G449600 Sobic001G449600 Sobic006G143400--Sobic001G449600 Sobic002G115025 Sobic002G115025 Sobic006G217900--Sobic002G115025 Sobic001G054500 Sobic001G054500 Sobic006G217900--Sobic001G054500 Sobic002G042000 Sobic002G042000 Sobic006G217900--Sobic002G042000 Sobic001G256200 Sobic001G256200 Sobic006G217900--Sobic001G256200 Sobic005G108601 Sobic005G108601 Sobic006G217900--Sobic005G108601 Sobic003G155600 Sobic003G155600 Sobic006G217900--Sobic003G155600 Sobic006G217900--Sobic003G364300 Sobic001G525200 Sobic001G525200 Sobic006G217900--Sobic001G525200 Sobic006G217900--Sobic007G008100 Sobic001G091600--Sobic003G041600 Sobic001G091600--Sobic003G364300 Sobic001G091600--Sobic006G143400 Sobic004G192100 Sobic004G192100 Sobic001G091600--Sobic004G192100 Sobic001G091600--Sobic010G156500 Sobic003G364000 Sobic003G364000 Sobic001G091600--Sobic003G364000 Sobic001G091600--Sobic007G025500 Sobic001G091600--Sobic005G005600 Sobic001G091600--Sobic010G166500 Sobic006G100200--Sobic008G111500 Sobic003G041200 Sobic003G041200 Sobic006G100200--Sobic003G041200 Sobic005G139075 Sobic005G139075 Sobic006G100200--Sobic005G139075 Sobic006G100200--Sobic009G221400 Sobic002G336600 Sobic002G336600 Sobic006G100200--Sobic002G336600 Sobic002G192000 Sobic002G192000 Sobic006G100200--Sobic002G192000 Sobic009G198600 Sobic009G198600 Sobic006G100200--Sobic009G198600 Sobic002G319500 Sobic002G319500 Sobic006G100200--Sobic002G319500 Sobic002G353900 Sobic002G353900 Sobic006G100200--Sobic002G353900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.