Gene annotation
Transcriptome id Sobic.009G150700.7,Sobic.009G150700.6,Sobic.009G150700.4,Sobic.009G150700.5,Sobic.009G150700.3
Synonym
Functional annotation expressed protein
UniProt A0A1B6P8L9
Pfam PF17032
Panther DB PTHR36718:SF1 PTHR36718 PTHR36718 PTHR36718:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G44414 : -
RAP-DB (Rice) LOC_Os05g35970.1 : expressed protein
MaizeGDB (Corn) Zm00025a037308
Brachypodium KQK06067
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G402600 ubiquitin family domain containing protein, expressed K12160: SUMO, small ubiquitin-related modifier
2 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
3 Sobic.002G129200 DNA-directed RNA polymerase subunit, putative, expressed K03014: RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2
4 Sobic.009G127300 pentatricopeptide repeat-containing protein, putative, expressed -
5 Sobic.006G071814 - -
6 Sobic.003G265400 threonine synthase, chloroplast precursor, putative, expressed K01733: threonine synthase
7 Sobic.002G072600 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
8 Sobic.004G023900 3-isopropylmalate dehydratase large subunit 2, putative, expressed K01703: leuC, 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit
9 Sobic.006G207500 expressed protein -
10 Sobic.001G147100 pre-rRNA-processing protein TSR2, putative, expressed K14800: pre-rRNA-processing protein TSR2
11 Sobic.004G016300 PPR repeat containing protein, expressed -
12 Sobic.009G015700 actin-depolymerizing factor, putative, expressed K05765: cofilin
13 Sobic.010G152100 expressed protein -
14 Sobic.001G218800 expressed protein -
15 Sobic.003G384300 NADP-dependent oxidoreductase, putative, expressed -
16 Sobic.003G126800 cysteine proteinase inhibitor precursor protein, putative, expressed -
17 Sobic.003G190500 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
18 Sobic.007G224300 RING finger protein, putative, expressed -
19 Sobic.010G163100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
20 Sobic.001G463500 FAD-linked sulfhydryl oxidase ALR, putative, expressed K17783: ERV1, GFER, mitochondrial FAD-linked sulfhydryl oxidase


Gene co-expression network
sample Sobic009G150700 Sobic009G150700 Sobic003G402600 Sobic003G402600 Sobic009G150700--Sobic003G402600 Sobic006G011000 Sobic006G011000 Sobic009G150700--Sobic006G011000 Sobic002G129200 Sobic002G129200 Sobic009G150700--Sobic002G129200 Sobic009G127300 Sobic009G127300 Sobic009G150700--Sobic009G127300 Sobic006G071814 Sobic006G071814 Sobic009G150700--Sobic006G071814 Sobic003G265400 Sobic003G265400 Sobic009G150700--Sobic003G265400 Sobic002G072600 Sobic002G072600 Sobic009G150700--Sobic002G072600 Sobic004G023900 Sobic004G023900 Sobic009G150700--Sobic004G023900 Sobic006G207500 Sobic006G207500 Sobic009G150700--Sobic006G207500 Sobic003G402600--Sobic006G011000 Sobic010G178800 Sobic010G178800 Sobic003G402600--Sobic010G178800 Sobic003G369500 Sobic003G369500 Sobic003G402600--Sobic003G369500 Sobic010G267500 Sobic010G267500 Sobic003G402600--Sobic010G267500 Sobic009G015700 Sobic009G015700 Sobic003G402600--Sobic009G015700 Sobic006G211800 Sobic006G211800 Sobic003G402600--Sobic006G211800 Sobic004G012800 Sobic004G012800 Sobic003G402600--Sobic004G012800 Sobic001G250300 Sobic001G250300 Sobic003G402600--Sobic001G250300 Sobic002G428200 Sobic002G428200 Sobic003G402600--Sobic002G428200 Sobic006G094600 Sobic006G094600 Sobic006G011000--Sobic006G094600 Sobic001G329300 Sobic001G329300 Sobic006G011000--Sobic001G329300 Sobic002G204000 Sobic002G204000 Sobic006G011000--Sobic002G204000 Sobic008G137600 Sobic008G137600 Sobic006G011000--Sobic008G137600 Sobic001G147100 Sobic001G147100 Sobic006G011000--Sobic001G147100 Sobic006G109700 Sobic006G109700 Sobic006G011000--Sobic006G109700 Sobic001G532100 Sobic001G532100 Sobic006G011000--Sobic001G532100 Sobic010G163100 Sobic010G163100 Sobic006G011000--Sobic010G163100 Sobic006G011000--Sobic003G402600 Sobic003G031200 Sobic003G031200 Sobic002G129200--Sobic003G031200 Sobic010G220900 Sobic010G220900 Sobic002G129200--Sobic010G220900 Sobic002G359900 Sobic002G359900 Sobic002G129200--Sobic002G359900 Sobic002G129200--Sobic006G011000 Sobic003G436500 Sobic003G436500 Sobic002G129200--Sobic003G436500 Sobic001G382200 Sobic001G382200 Sobic002G129200--Sobic001G382200 Sobic004G010700 Sobic004G010700 Sobic002G129200--Sobic004G010700 Sobic002G083800 Sobic002G083800 Sobic002G129200--Sobic002G083800 Sobic009G201800 Sobic009G201800 Sobic002G129200--Sobic009G201800 Sobic001G011800 Sobic001G011800 Sobic009G127300--Sobic001G011800 Sobic009G127300--Sobic003G436500 Sobic009G127300--Sobic004G023900 Sobic006G276200 Sobic006G276200 Sobic009G127300--Sobic006G276200 Sobic009G127300--Sobic001G147100 Sobic004G028000 Sobic004G028000 Sobic009G127300--Sobic004G028000 Sobic001G218800 Sobic001G218800 Sobic009G127300--Sobic001G218800 Sobic002G037800 Sobic002G037800 Sobic009G127300--Sobic002G037800 Sobic001G012100 Sobic001G012100 Sobic009G127300--Sobic001G012100 Sobic006G071814--Sobic006G011000 Sobic001G249700 Sobic001G249700 Sobic006G071814--Sobic001G249700 Sobic006G071814--Sobic001G218800 Sobic006G071814--Sobic001G147100 Sobic006G183000 Sobic006G183000 Sobic006G071814--Sobic006G183000 Sobic004G016300 Sobic004G016300 Sobic006G071814--Sobic004G016300 Sobic006G071814--Sobic009G201800 Sobic008G080000 Sobic008G080000 Sobic006G071814--Sobic008G080000 Sobic006G071814--Sobic006G207500 Sobic004G217600 Sobic004G217600 Sobic003G265400--Sobic004G217600 Sobic003G265400--Sobic003G369500 Sobic009G131100 Sobic009G131100 Sobic003G265400--Sobic009G131100 Sobic001G193200 Sobic001G193200 Sobic003G265400--Sobic001G193200 Sobic005G168700 Sobic005G168700 Sobic003G265400--Sobic005G168700 Sobic001G131400 Sobic001G131400 Sobic003G265400--Sobic001G131400 Sobic006G281200 Sobic006G281200 Sobic003G265400--Sobic006G281200 Sobic003G291400 Sobic003G291400 Sobic003G265400--Sobic003G291400 Sobic006G206700 Sobic006G206700 Sobic003G265400--Sobic006G206700 Sobic003G162000 Sobic003G162000 Sobic002G072600--Sobic003G162000 Sobic010G156000 Sobic010G156000 Sobic002G072600--Sobic010G156000 Sobic002G134600 Sobic002G134600 Sobic002G072600--Sobic002G134600 Sobic004G311900 Sobic004G311900 Sobic002G072600--Sobic004G311900 Sobic006G073200 Sobic006G073200 Sobic002G072600--Sobic006G073200 Sobic004G246900 Sobic004G246900 Sobic002G072600--Sobic004G246900 Sobic008G161700 Sobic008G161700 Sobic002G072600--Sobic008G161700 Sobic001G362200 Sobic001G362200 Sobic002G072600--Sobic001G362200 Sobic006G032900 Sobic006G032900 Sobic002G072600--Sobic006G032900 Sobic003G190500 Sobic003G190500 Sobic004G023900--Sobic003G190500 Sobic001G039500 Sobic001G039500 Sobic004G023900--Sobic001G039500 Sobic004G023900--Sobic009G127300 Sobic006G245100 Sobic006G245100 Sobic004G023900--Sobic006G245100 Sobic004G018000 Sobic004G018000 Sobic004G023900--Sobic004G018000 Sobic003G159500 Sobic003G159500 Sobic004G023900--Sobic003G159500 Sobic002G390300 Sobic002G390300 Sobic004G023900--Sobic002G390300 Sobic001G008700 Sobic001G008700 Sobic004G023900--Sobic001G008700 Sobic002G119400 Sobic002G119400 Sobic004G023900--Sobic002G119400 Sobic006G207500--Sobic010G267500 Sobic010G065400 Sobic010G065400 Sobic006G207500--Sobic010G065400 Sobic009G031200 Sobic009G031200 Sobic006G207500--Sobic009G031200 Sobic006G207500--Sobic006G183000 Sobic006G222400 Sobic006G222400 Sobic006G207500--Sobic006G222400 Sobic007G097900 Sobic007G097900 Sobic006G207500--Sobic007G097900 Sobic003G052400 Sobic003G052400 Sobic006G207500--Sobic003G052400 Sobic001G061700 Sobic001G061700 Sobic006G207500--Sobic001G061700 Sobic006G207500--Sobic008G137600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.