Gene annotation
Transcriptome id Sobic.010G163100.1
Synonym Sb10g021710
Functional annotation ribosomal protein L5, putative, expressed
UniProt A0A194YJK4
Pfam PF00281 PF00673
Panther DB PTHR11994 PTHR11994:SF14
NCBI CDD KOG0397; 60S ribosomal protein L11
KEGG Orthology K02868; RP-L11e, large subunit ribosomal protein L11e
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G45775 : Ribosomal L5P family protein
RAP-DB (Rice) LOC_Os05g11710.1 : ribosomal protein L5, putative, expressed
MaizeGDB (Corn) Zm00025a022996 , Zm00025a051094
Brachypodium KQK03237 , KQK07062 , PNT70138
Barley HORVU3Hr1G026060.3 , HORVU3Hr1G026060.2 , HORVU3Hr1G026060.1 , HORVU3Hr1G026060.5 , HORVU3Hr1G026060.4 , HORVU1Hr1G028820.6 , HORVU1Hr1G028820.5 , HORVU1Hr1G028820.4 , HORVU1Hr1G028820.3 , HORVU1Hr1G028820.2 , HORVU1Hr1G028820.1
Wheat TraesCS3A02G136800 , TraesCS1A02G125100 , TraesCS1D02G128800 , TraesCS3B02G154600 , TraesCS1B02G144300
Populus PNT32299 , PNT32300 , PNT32301 , PNT32302 , PNT32303 , PNT32304


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
2 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
3 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
4 Sobic.003G122000 BCAS2 protein, putative, expressed K12861: pre-mRNA-splicing factor SPF27
5 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
6 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
7 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
8 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
9 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
10 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
11 Sobic.004G080200 3-oxoacyl-synthase, putative, expressed K09458: fabF, OXSM, 3-oxoacyl-[acyl-carrier-protein] synthase II
12 Sobic.010G029900 leucine carboxyl methyltransferase 1, putative, expressed K15451: PPM2, LCMT2, tRNA wybutosine-synthesizing protein 4
13 Sobic.008G115600 RNA polymerase Rpb7, N-terminal domain containing protein, expressed -
14 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
15 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
16 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
17 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
18 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
19 Sobic.004G210800 iron-stress related protein, putative, expressed -
20 Sobic.008G162000 rhodanese-like domain containing protein, putative, expressed K01011: TST, MPST, thiosulfate/3-mercaptopyruvate sulfurtransferase


Gene co-expression network
sample Sobic010G163100 Sobic010G163100 Sobic006G011000 Sobic006G011000 Sobic010G163100--Sobic006G011000 Sobic002G204000 Sobic002G204000 Sobic010G163100--Sobic002G204000 Sobic001G487100 Sobic001G487100 Sobic010G163100--Sobic001G487100 Sobic003G122000 Sobic003G122000 Sobic010G163100--Sobic003G122000 Sobic003G121300 Sobic003G121300 Sobic010G163100--Sobic003G121300 Sobic010G220900 Sobic010G220900 Sobic010G163100--Sobic010G220900 Sobic001G249700 Sobic001G249700 Sobic010G163100--Sobic001G249700 Sobic004G156800 Sobic004G156800 Sobic010G163100--Sobic004G156800 Sobic009G258400 Sobic009G258400 Sobic010G163100--Sobic009G258400 Sobic006G094600 Sobic006G094600 Sobic006G011000--Sobic006G094600 Sobic001G329300 Sobic001G329300 Sobic006G011000--Sobic001G329300 Sobic006G011000--Sobic002G204000 Sobic008G137600 Sobic008G137600 Sobic006G011000--Sobic008G137600 Sobic001G147100 Sobic001G147100 Sobic006G011000--Sobic001G147100 Sobic006G109700 Sobic006G109700 Sobic006G011000--Sobic006G109700 Sobic001G532100 Sobic001G532100 Sobic006G011000--Sobic001G532100 Sobic006G011000--Sobic010G163100 Sobic003G402600 Sobic003G402600 Sobic006G011000--Sobic003G402600 Sobic001G038100 Sobic001G038100 Sobic002G204000--Sobic001G038100 Sobic004G186000 Sobic004G186000 Sobic002G204000--Sobic004G186000 Sobic004G316900 Sobic004G316900 Sobic002G204000--Sobic004G316900 Sobic004G019600 Sobic004G019600 Sobic002G204000--Sobic004G019600 Sobic002G204000--Sobic001G329300 Sobic010G193800 Sobic010G193800 Sobic002G204000--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic002G204000--Sobic004G226800 Sobic001G136900 Sobic001G136900 Sobic002G204000--Sobic001G136900 Sobic001G507400 Sobic001G507400 Sobic002G204000--Sobic001G507400 Sobic003G132000 Sobic003G132000 Sobic001G487100--Sobic003G132000 Sobic004G320100 Sobic004G320100 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic003G046300 Sobic003G046300 Sobic001G487100--Sobic003G046300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic003G128300 Sobic003G128300 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic009G207200 Sobic009G207200 Sobic003G122000--Sobic009G207200 Sobic006G087100 Sobic006G087100 Sobic003G122000--Sobic006G087100 Sobic003G122000--Sobic001G506000 Sobic003G122000--Sobic001G487100 Sobic007G165300 Sobic007G165300 Sobic003G122000--Sobic007G165300 Sobic002G199400 Sobic002G199400 Sobic003G122000--Sobic002G199400 Sobic008G125000 Sobic008G125000 Sobic003G122000--Sobic008G125000 Sobic005G175000 Sobic005G175000 Sobic003G122000--Sobic005G175000 Sobic001G469200 Sobic001G469200 Sobic003G122000--Sobic001G469200 Sobic001G114500 Sobic001G114500 Sobic003G121300--Sobic001G114500 Sobic010G237900 Sobic010G237900 Sobic003G121300--Sobic010G237900 Sobic010G029900 Sobic010G029900 Sobic003G121300--Sobic010G029900 Sobic005G160400 Sobic005G160400 Sobic003G121300--Sobic005G160400 Sobic003G121300--Sobic003G132000 Sobic003G121300--Sobic001G487100 Sobic003G121300--Sobic004G156800 Sobic002G361400 Sobic002G361400 Sobic003G121300--Sobic002G361400 Sobic009G164000 Sobic009G164000 Sobic003G121300--Sobic009G164000 Sobic010G220900--Sobic006G087100 Sobic010G220900--Sobic004G019600 Sobic010G220900--Sobic009G258400 Sobic010G220900--Sobic001G532100 Sobic009G201800 Sobic009G201800 Sobic010G220900--Sobic009G201800 Sobic009G212300 Sobic009G212300 Sobic010G220900--Sobic009G212300 Sobic004G249300 Sobic004G249300 Sobic010G220900--Sobic004G249300 Sobic008G118500 Sobic008G118500 Sobic010G220900--Sobic008G118500 Sobic010G220900--Sobic001G469200 Sobic009G033900 Sobic009G033900 Sobic001G249700--Sobic009G033900 Sobic010G247400 Sobic010G247400 Sobic001G249700--Sobic010G247400 Sobic001G249700--Sobic009G164000 Sobic001G249700--Sobic004G156800 Sobic002G256200 Sobic002G256200 Sobic001G249700--Sobic002G256200 Sobic001G259000 Sobic001G259000 Sobic001G249700--Sobic001G259000 Sobic006G270600 Sobic006G270600 Sobic001G249700--Sobic006G270600 Sobic001G168900 Sobic001G168900 Sobic001G249700--Sobic001G168900 Sobic004G356900 Sobic004G356900 Sobic001G249700--Sobic004G356900 Sobic007G102700 Sobic007G102700 Sobic004G156800--Sobic007G102700 Sobic004G156800--Sobic010G237900 Sobic004G156800--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic004G156800--Sobic001G527300 Sobic004G129300 Sobic004G129300 Sobic004G156800--Sobic004G129300 Sobic004G156800--Sobic001G114500 Sobic004G156800--Sobic009G164000 Sobic010G007100 Sobic010G007100 Sobic004G156800--Sobic010G007100 Sobic006G204800 Sobic006G204800 Sobic004G156800--Sobic006G204800 Sobic009G258400--Sobic001G168900 Sobic006G120800 Sobic006G120800 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic009G258400--Sobic001G291800 Sobic009G258400--Sobic003G132000 Sobic009G258400--Sobic001G507400
Octagon: transcription factors


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