Gene annotation
Transcriptome id Sobic.003G122000.1
Synonym Sb03g010330, MOS4
Functional annotation BCAS2 protein, putative, expressed
UniProt C5XGI1
Pfam PF05700
Panther DB PTHR13296:SF0 PTHR13296
NCBI CDD KOG3096; Spliceosome-associated coiled-coil protein
KEGG Orthology K12861; pre-mRNA-splicing factor SPF27
Gene Ontology GO:0006397; mRNA processing


Orthologs (automatic annotation)
TAIR AT3G18165 : modifier of snc1,4
RAP-DB (Rice) LOC_Os01g16010.2 : BCAS2 protein, putative, expressed
MaizeGDB (Corn) Zm00025a024031
Brachypodium KQK03774
Barley HORVU3Hr1G037080.1
Wheat TraesCS3B02G211300 , TraesCS3D02G186100 , TraesCS3A02G181200
Populus -


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cDNA sequences
Sobic.003G122000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
2 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind
3 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
4 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
5 Sobic.007G165300 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
6 Sobic.002G199400 growth regulator related protein, putative, expressed -
7 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
8 Sobic.005G175000 glutathione S-transferase, N-terminal domain containing protein, expressed K00799: GST, glutathione S-transferase
9 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
10 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
11 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
12 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
13 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
14 Sobic.007G022700 proteasome subunit, putative, expressed K12177: COPS3, COP9 signalosome complex subunit 3
15 Sobic.010G163100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
16 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
17 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
18 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
19 Sobic.005G178300 peptidyl-prolyl cis-trans isomerase, putative, expressed -
20 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -


Gene co-expression network
sample Sobic003G122000 Sobic003G122000 Sobic009G207200 Sobic009G207200 Sobic003G122000--Sobic009G207200 Sobic006G087100 Sobic006G087100 Sobic003G122000--Sobic006G087100 Sobic001G506000 Sobic001G506000 Sobic003G122000--Sobic001G506000 Sobic001G487100 Sobic001G487100 Sobic003G122000--Sobic001G487100 Sobic007G165300 Sobic007G165300 Sobic003G122000--Sobic007G165300 Sobic002G199400 Sobic002G199400 Sobic003G122000--Sobic002G199400 Sobic008G125000 Sobic008G125000 Sobic003G122000--Sobic008G125000 Sobic005G175000 Sobic005G175000 Sobic003G122000--Sobic005G175000 Sobic001G469200 Sobic001G469200 Sobic003G122000--Sobic001G469200 Sobic006G094600 Sobic006G094600 Sobic009G207200--Sobic006G094600 Sobic001G061200 Sobic001G061200 Sobic009G207200--Sobic001G061200 Sobic001G358500 Sobic001G358500 Sobic009G207200--Sobic001G358500 Sobic002G029300 Sobic002G029300 Sobic009G207200--Sobic002G029300 Sobic003G005900 Sobic003G005900 Sobic009G207200--Sobic003G005900 Sobic007G217400 Sobic007G217400 Sobic009G207200--Sobic007G217400 Sobic008G072200 Sobic008G072200 Sobic009G207200--Sobic008G072200 Sobic004G075200 Sobic004G075200 Sobic009G207200--Sobic004G075200 Sobic007G022700 Sobic007G022700 Sobic009G207200--Sobic007G022700 Sobic010G220900 Sobic010G220900 Sobic006G087100--Sobic010G220900 Sobic004G019600 Sobic004G019600 Sobic006G087100--Sobic004G019600 Sobic001G346300 Sobic001G346300 Sobic006G087100--Sobic001G346300 Sobic009G108500 Sobic009G108500 Sobic006G087100--Sobic009G108500 Sobic008G118500 Sobic008G118500 Sobic006G087100--Sobic008G118500 Sobic004G133700 Sobic004G133700 Sobic006G087100--Sobic004G133700 Sobic001G218800 Sobic001G218800 Sobic006G087100--Sobic001G218800 Sobic006G087100--Sobic003G122000 Sobic002G359900 Sobic002G359900 Sobic006G087100--Sobic002G359900 Sobic001G506000--Sobic001G487100 Sobic001G506000--Sobic004G075200 Sobic001G115500 Sobic001G115500 Sobic001G506000--Sobic001G115500 Sobic001G506000--Sobic005G175000 Sobic001G506000--Sobic009G207200 Sobic001G506000--Sobic003G122000 Sobic001G506000--Sobic001G469200 Sobic001G506000--Sobic007G165300 Sobic002G280900 Sobic002G280900 Sobic001G506000--Sobic002G280900 Sobic003G132000 Sobic003G132000 Sobic001G487100--Sobic003G132000 Sobic004G320100 Sobic004G320100 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic003G046300 Sobic003G046300 Sobic001G487100--Sobic003G046300 Sobic003G121300 Sobic003G121300 Sobic001G487100--Sobic003G121300 Sobic001G487100--Sobic001G506000 Sobic003G128300 Sobic003G128300 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic004G184000 Sobic004G184000 Sobic007G165300--Sobic004G184000 Sobic007G165300--Sobic007G217400 Sobic007G165300--Sobic009G207200 Sobic003G170300 Sobic003G170300 Sobic007G165300--Sobic003G170300 Sobic003G028100 Sobic003G028100 Sobic007G165300--Sobic003G028100 Sobic007G165300--Sobic001G506000 Sobic005G178300 Sobic005G178300 Sobic007G165300--Sobic005G178300 Sobic009G201800 Sobic009G201800 Sobic007G165300--Sobic009G201800 Sobic010G258000 Sobic010G258000 Sobic007G165300--Sobic010G258000 Sobic002G160700 Sobic002G160700 Sobic002G199400--Sobic002G160700 Sobic001G151600 Sobic001G151600 Sobic002G199400--Sobic001G151600 Sobic002G199400--Sobic001G469200 Sobic002G199400--Sobic001G358500 Sobic006G259900 Sobic006G259900 Sobic002G199400--Sobic006G259900 Sobic006G282200 Sobic006G282200 Sobic002G199400--Sobic006G282200 Sobic002G199400--Sobic005G175000 Sobic004G030400 Sobic004G030400 Sobic002G199400--Sobic004G030400 Sobic005G144201 Sobic005G144201 Sobic002G199400--Sobic005G144201 Sobic009G056300 Sobic009G056300 Sobic008G125000--Sobic009G056300 Sobic008G125000--Sobic001G115500 Sobic006G245700 Sobic006G245700 Sobic008G125000--Sobic006G245700 Sobic003G307900 Sobic003G307900 Sobic008G125000--Sobic003G307900 Sobic008G125000--Sobic004G075200 Sobic009G120500 Sobic009G120500 Sobic008G125000--Sobic009G120500 Sobic007G010900 Sobic007G010900 Sobic008G125000--Sobic007G010900 Sobic006G041100 Sobic006G041100 Sobic008G125000--Sobic006G041100 Sobic004G358900 Sobic004G358900 Sobic008G125000--Sobic004G358900 Sobic005G175000--Sobic002G199400 Sobic005G175000--Sobic001G487100 Sobic005G175000--Sobic001G506000 Sobic005G175000--Sobic003G046300 Sobic006G188500 Sobic006G188500 Sobic005G175000--Sobic006G188500 Sobic005G175000--Sobic001G469200 Sobic001G408600 Sobic001G408600 Sobic005G175000--Sobic001G408600 Sobic005G175000--Sobic003G132000 Sobic001G456800 Sobic001G456800 Sobic005G175000--Sobic001G456800 Sobic001G469200--Sobic002G199400 Sobic001G469200--Sobic001G115500 Sobic001G085800 Sobic001G085800 Sobic001G469200--Sobic001G085800 Sobic001G469200--Sobic005G115500 Sobic001G469200--Sobic003G132000 Sobic001G469200--Sobic004G075200 Sobic010G108900 Sobic010G108900 Sobic001G469200--Sobic010G108900 Sobic001G469200--Sobic006G245700 Sobic001G469200--Sobic001G487100
Octagon: transcription factors


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