Gene annotation
Transcriptome id Sobic.006G087100.1
Synonym Sb06g017290
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt A0A1Z5RD07
Pfam -
Panther DB PTHR12675 PTHR12675:SF5
NCBI CDD -
KEGG Orthology K14943; muscleblind
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21580 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os04g35800.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a056103 , Zm00025a011302
Brachypodium KQJ82744
Barley HORVU2Hr1G076550.11 , HORVU2Hr1G076550.10 , HORVU2Hr1G076550.8 , HORVU2Hr1G076550.3 , HORVU2Hr1G076550.7
Wheat TraesCS2A02G307700 , TraesCS2A02G307700 , TraesCS2B02G324300 , TraesCS2B02G324300 , TraesCS2D02G306100 , TraesCS2D02G306100 , TraesCS2D02G306100
Populus -


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cDNA sequences
Sobic.006G087100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
2 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
3 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17
4 Sobic.009G108500 acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
5 Sobic.008G118500 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
6 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
7 Sobic.001G218800 expressed protein -
8 Sobic.003G122000 BCAS2 protein, putative, expressed K12861: pre-mRNA-splicing factor SPF27
9 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
10 Sobic.003G307900 BSD domain containing protein, expressed -
11 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
12 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
13 Sobic.010G108900 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
14 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
15 Sobic.007G119900 signal recognition particle receptor subunit beta, putative, expressed K12272: SRPRB, signal recognition particle receptor subunit beta
16 Sobic.010G176500 expressed protein -
17 Sobic.003G083900 metallo-beta-lactamase family protein, putative, expressed -
18 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
19 Sobic.001G544100 peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed -
20 Sobic.005G187500 GRF-interacting factor 2, putative, expressed -


Gene co-expression network
sample Sobic006G087100 Sobic006G087100 Sobic010G220900 Sobic010G220900 Sobic006G087100--Sobic010G220900 Sobic004G019600 Sobic004G019600 Sobic006G087100--Sobic004G019600 Sobic001G346300 Sobic001G346300 Sobic006G087100--Sobic001G346300 Sobic009G108500 Sobic009G108500 Sobic006G087100--Sobic009G108500 Sobic008G118500 Sobic008G118500 Sobic006G087100--Sobic008G118500 Sobic004G133700 Sobic004G133700 Sobic006G087100--Sobic004G133700 Sobic001G218800 Sobic001G218800 Sobic006G087100--Sobic001G218800 Sobic003G122000 Sobic003G122000 Sobic006G087100--Sobic003G122000 Sobic002G359900 Sobic002G359900 Sobic006G087100--Sobic002G359900 Sobic010G220900--Sobic006G087100 Sobic010G220900--Sobic004G019600 Sobic009G258400 Sobic009G258400 Sobic010G220900--Sobic009G258400 Sobic001G532100 Sobic001G532100 Sobic010G220900--Sobic001G532100 Sobic009G201800 Sobic009G201800 Sobic010G220900--Sobic009G201800 Sobic009G212300 Sobic009G212300 Sobic010G220900--Sobic009G212300 Sobic004G249300 Sobic004G249300 Sobic010G220900--Sobic004G249300 Sobic010G220900--Sobic008G118500 Sobic001G469200 Sobic001G469200 Sobic010G220900--Sobic001G469200 Sobic002G204000 Sobic002G204000 Sobic004G019600--Sobic002G204000 Sobic004G019600--Sobic001G346300 Sobic001G114500 Sobic001G114500 Sobic004G019600--Sobic001G114500 Sobic004G019600--Sobic010G220900 Sobic004G019600--Sobic006G087100 Sobic001G152000 Sobic001G152000 Sobic004G019600--Sobic001G152000 Sobic004G019600--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic004G019600--Sobic004G212700 Sobic009G231900 Sobic009G231900 Sobic004G019600--Sobic009G231900 Sobic001G346300--Sobic004G019600 Sobic001G346300--Sobic006G087100 Sobic001G291800 Sobic001G291800 Sobic001G346300--Sobic001G291800 Sobic001G346300--Sobic009G258400 Sobic010G186600 Sobic010G186600 Sobic001G346300--Sobic010G186600 Sobic006G010000 Sobic006G010000 Sobic001G346300--Sobic006G010000 Sobic001G346300--Sobic001G152000 Sobic001G346300--Sobic004G212700 Sobic006G233300 Sobic006G233300 Sobic001G346300--Sobic006G233300 Sobic006G183000 Sobic006G183000 Sobic009G108500--Sobic006G183000 Sobic009G108500--Sobic006G087100 Sobic009G108500--Sobic001G532100 Sobic001G189600 Sobic001G189600 Sobic009G108500--Sobic001G189600 Sobic001G294900 Sobic001G294900 Sobic009G108500--Sobic001G294900 Sobic006G109700 Sobic006G109700 Sobic009G108500--Sobic006G109700 Sobic010G108900 Sobic010G108900 Sobic009G108500--Sobic010G108900 Sobic006G225300 Sobic006G225300 Sobic009G108500--Sobic006G225300 Sobic006G203100 Sobic006G203100 Sobic009G108500--Sobic006G203100 Sobic001G178400 Sobic001G178400 Sobic008G118500--Sobic001G178400 Sobic008G118500--Sobic006G087100 Sobic009G102900 Sobic009G102900 Sobic008G118500--Sobic009G102900 Sobic009G002000 Sobic009G002000 Sobic008G118500--Sobic009G002000 Sobic008G118500--Sobic010G220900 Sobic008G118500--Sobic001G469200 Sobic008G118500--Sobic001G291800 Sobic008G118500--Sobic009G258400 Sobic008G118500--Sobic001G346300 Sobic004G133700--Sobic001G291800 Sobic003G083900 Sobic003G083900 Sobic004G133700--Sobic003G083900 Sobic001G226000 Sobic001G226000 Sobic004G133700--Sobic001G226000 Sobic005G025800 Sobic005G025800 Sobic004G133700--Sobic005G025800 Sobic007G119900 Sobic007G119900 Sobic004G133700--Sobic007G119900 Sobic005G199200 Sobic005G199200 Sobic004G133700--Sobic005G199200 Sobic001G168900 Sobic001G168900 Sobic004G133700--Sobic001G168900 Sobic004G133700--Sobic001G152000 Sobic007G183300 Sobic007G183300 Sobic004G133700--Sobic007G183300 Sobic001G218800--Sobic010G108900 Sobic003G004700 Sobic003G004700 Sobic001G218800--Sobic003G004700 Sobic010G176500 Sobic010G176500 Sobic001G218800--Sobic010G176500 Sobic003G123000 Sobic003G123000 Sobic001G218800--Sobic003G123000 Sobic010G000300 Sobic010G000300 Sobic001G218800--Sobic010G000300 Sobic001G380500 Sobic001G380500 Sobic001G218800--Sobic001G380500 Sobic001G218800--Sobic006G087100 Sobic001G218800--Sobic006G233300 Sobic001G218800--Sobic009G108500 Sobic009G207200 Sobic009G207200 Sobic003G122000--Sobic009G207200 Sobic003G122000--Sobic006G087100 Sobic001G506000 Sobic001G506000 Sobic003G122000--Sobic001G506000 Sobic001G487100 Sobic001G487100 Sobic003G122000--Sobic001G487100 Sobic007G165300 Sobic007G165300 Sobic003G122000--Sobic007G165300 Sobic002G199400 Sobic002G199400 Sobic003G122000--Sobic002G199400 Sobic008G125000 Sobic008G125000 Sobic003G122000--Sobic008G125000 Sobic005G175000 Sobic005G175000 Sobic003G122000--Sobic005G175000 Sobic003G122000--Sobic001G469200 Sobic010G253100 Sobic010G253100 Sobic002G359900--Sobic010G253100 Sobic003G436500 Sobic003G436500 Sobic002G359900--Sobic003G436500 Sobic006G261100 Sobic006G261100 Sobic002G359900--Sobic006G261100 Sobic006G120800 Sobic006G120800 Sobic002G359900--Sobic006G120800 Sobic003G031200 Sobic003G031200 Sobic002G359900--Sobic003G031200 Sobic001G458200 Sobic001G458200 Sobic002G359900--Sobic001G458200 Sobic002G403200 Sobic002G403200 Sobic002G359900--Sobic002G403200 Sobic001G038100 Sobic001G038100 Sobic002G359900--Sobic001G038100 Sobic002G359900--Sobic002G204000
Octagon: transcription factors


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