Gene annotation
Transcriptome id Sobic.007G224300.1
Synonym Sb07g028950, CIP8
Functional annotation RING finger protein, putative, expressed
UniProt C5YJP3
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G02340 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os08g38060.1 : RING finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a004962 , Zm00025a050356
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G224300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G094500 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
2 Sobic.007G139900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.008G051400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
4 Sobic.002G138700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
5 Sobic.009G187600 methyltransferase domain containing protein, expressed -
6 Sobic.009G171100 prenylated rab acceptor, putative, expressed -
7 Sobic.004G018200 glycine-rich protein 2, putative, expressed -
8 Sobic.010G178800 solute carrier family 35 member B1, putative, expressed K15275: solute carrier family 35 (UDP-galactose transporter), member B1
9 Sobic.001G525400 receptor-like protein kinase At3g46290 precursor, putative, expressed -
10 Sobic.001G287600 transcription factor MYC7E, putative, expressed K13422: transcription factor MYC2
11 Sobic.004G323600 "SMG1(Ortholog in rice:Duan et al., 2014)"(PubMedID : 31659892)@STE_MEK_ste7_MAP2K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13413: mitogen-activated protein kinase kinase 4/5
12 Sobic.003G253500 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
13 Sobic.004G331800 alginate regulatory protein AlgP, putative, expressed -
14 Sobic.007G124100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
15 Sobic.005G044100 harpin-induced protein 1 domain containing protein, expressed -
16 Sobic.001G285000 - -
17 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
18 Sobic.001G084000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY3, expressed -
19 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
20 Sobic.005G208900 expressed protein K11968: ariadne-1


Gene co-expression network
sample Sobic007G224300 Sobic007G224300 Sobic006G094500 Sobic006G094500 Sobic007G224300--Sobic006G094500 Sobic007G139900 Sobic007G139900 Sobic007G224300--Sobic007G139900 Sobic008G051400 Sobic008G051400 Sobic007G224300--Sobic008G051400 Sobic002G138700 Sobic002G138700 Sobic007G224300--Sobic002G138700 Sobic009G187600 Sobic009G187600 Sobic007G224300--Sobic009G187600 Sobic009G171100 Sobic009G171100 Sobic007G224300--Sobic009G171100 Sobic004G018200 Sobic004G018200 Sobic007G224300--Sobic004G018200 Sobic010G178800 Sobic010G178800 Sobic007G224300--Sobic010G178800 Sobic001G525400 Sobic001G525400 Sobic007G224300--Sobic001G525400 Sobic006G094500--Sobic009G187600 Sobic006G094500--Sobic007G224300 Sobic001G188700 Sobic001G188700 Sobic006G094500--Sobic001G188700 Sobic001G451901 Sobic001G451901 Sobic006G094500--Sobic001G451901 Sobic001G434400 Sobic001G434400 Sobic006G094500--Sobic001G434400 Sobic002G422400 Sobic002G422400 Sobic006G094500--Sobic002G422400 Sobic006G094500--Sobic004G018200 Sobic002G280900 Sobic002G280900 Sobic006G094500--Sobic002G280900 Sobic007G031100 Sobic007G031100 Sobic006G094500--Sobic007G031100 Sobic009G010400 Sobic009G010400 Sobic007G139900--Sobic009G010400 Sobic005G208900 Sobic005G208900 Sobic007G139900--Sobic005G208900 Sobic007G139900--Sobic007G224300 Sobic007G124100 Sobic007G124100 Sobic007G139900--Sobic007G124100 Sobic004G006500 Sobic004G006500 Sobic007G139900--Sobic004G006500 Sobic001G287600 Sobic001G287600 Sobic007G139900--Sobic001G287600 Sobic001G118900 Sobic001G118900 Sobic007G139900--Sobic001G118900 Sobic004G065900 Sobic004G065900 Sobic007G139900--Sobic004G065900 Sobic004G086800 Sobic004G086800 Sobic007G139900--Sobic004G086800 Sobic008G051400--Sobic007G224300 Sobic008G051400--Sobic006G094500 Sobic006G099800 Sobic006G099800 Sobic008G051400--Sobic006G099800 Sobic007G181600 Sobic007G181600 Sobic008G051400--Sobic007G181600 Sobic001G011800 Sobic001G011800 Sobic008G051400--Sobic001G011800 Sobic004G028800 Sobic004G028800 Sobic008G051400--Sobic004G028800 Sobic001G148700 Sobic001G148700 Sobic008G051400--Sobic001G148700 Sobic004G015400 Sobic004G015400 Sobic008G051400--Sobic004G015400 Sobic009G149800 Sobic009G149800 Sobic008G051400--Sobic009G149800 Sobic006G259000 Sobic006G259000 Sobic002G138700--Sobic006G259000 Sobic001G084000 Sobic001G084000 Sobic002G138700--Sobic001G084000 Sobic007G090300 Sobic007G090300 Sobic002G138700--Sobic007G090300 Sobic002G138700--Sobic004G086800 Sobic010G102000 Sobic010G102000 Sobic002G138700--Sobic010G102000 Sobic001G195100 Sobic001G195100 Sobic002G138700--Sobic001G195100 Sobic003G416500 Sobic003G416500 Sobic002G138700--Sobic003G416500 Sobic002G138700--Sobic009G010400 Sobic002G138700--Sobic001G287600 Sobic009G187600--Sobic006G094500 Sobic003G348200 Sobic003G348200 Sobic009G187600--Sobic003G348200 Sobic010G185100 Sobic010G185100 Sobic009G187600--Sobic010G185100 Sobic009G218000 Sobic009G218000 Sobic009G187600--Sobic009G218000 Sobic007G010200 Sobic007G010200 Sobic009G187600--Sobic007G010200 Sobic009G187600--Sobic001G188700 Sobic009G187600--Sobic002G422400 Sobic009G187600--Sobic007G031100 Sobic005G044100 Sobic005G044100 Sobic009G187600--Sobic005G044100 Sobic009G171100--Sobic001G525400 Sobic001G441000 Sobic001G441000 Sobic009G171100--Sobic001G441000 Sobic003G253500 Sobic003G253500 Sobic009G171100--Sobic003G253500 Sobic004G259500 Sobic004G259500 Sobic009G171100--Sobic004G259500 Sobic001G408100 Sobic001G408100 Sobic009G171100--Sobic001G408100 Sobic007G188100 Sobic007G188100 Sobic009G171100--Sobic007G188100 Sobic002G353400 Sobic002G353400 Sobic009G171100--Sobic002G353400 Sobic003G392200 Sobic003G392200 Sobic009G171100--Sobic003G392200 Sobic009G182200 Sobic009G182200 Sobic009G171100--Sobic009G182200 Sobic004G018200--Sobic001G188700 Sobic006G181700 Sobic006G181700 Sobic004G018200--Sobic006G181700 Sobic007G019501 Sobic007G019501 Sobic004G018200--Sobic007G019501 Sobic009G156300 Sobic009G156300 Sobic004G018200--Sobic009G156300 Sobic010G039000 Sobic010G039000 Sobic004G018200--Sobic010G039000 Sobic003G283300 Sobic003G283300 Sobic004G018200--Sobic003G283300 Sobic009G077100 Sobic009G077100 Sobic004G018200--Sobic009G077100 Sobic004G018200--Sobic006G094500 Sobic004G018200--Sobic001G451901 Sobic003G402600 Sobic003G402600 Sobic010G178800--Sobic003G402600 Sobic010G178800--Sobic009G171100 Sobic010G178800--Sobic001G408100 Sobic004G323600 Sobic004G323600 Sobic010G178800--Sobic004G323600 Sobic005G184200 Sobic005G184200 Sobic010G178800--Sobic005G184200 Sobic009G050000 Sobic009G050000 Sobic010G178800--Sobic009G050000 Sobic004G025300 Sobic004G025300 Sobic010G178800--Sobic004G025300 Sobic010G178800--Sobic001G441000 Sobic010G178800--Sobic003G253500 Sobic001G525400--Sobic009G171100 Sobic001G525400--Sobic003G253500 Sobic001G525400--Sobic002G353400 Sobic001G525400--Sobic007G188100 Sobic001G370600 Sobic001G370600 Sobic001G525400--Sobic001G370600 Sobic002G330300 Sobic002G330300 Sobic001G525400--Sobic002G330300 Sobic007G011000 Sobic007G011000 Sobic001G525400--Sobic007G011000 Sobic003G338900 Sobic003G338900 Sobic001G525400--Sobic003G338900 Sobic001G525400--Sobic003G392200
Octagon: transcription factors


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