Gene annotation
Transcriptome id Sobic.004G018200.2
Synonym Sb04g001720, CSDP1
Functional annotation glycine-rich protein 2, putative, expressed
UniProt C5XT02
Pfam PF14392 PF00313 PF00098
Panther DB PTHR11544 PTHR11544:SF49
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding GO:0008270zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G36020 : cold shock domain protein 1
RAP-DB (Rice) LOC_Os02g02870.1 : glycine-rich protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a034914
Brachypodium KQJ92973
Barley HORVU6Hr1G012510.1 , HORVU6Hr1G012510.2 , HORVU6Hr1G012510.5 , HORVU6Hr1G012510.4 , HORVU6Hr1G012510.6 , HORVU6Hr1G012510.3
Wheat TraesCS6A02G069500 , TraesCS6D02G067500 , TraesCS6B02G093900
Populus -


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cDNA sequences
Sobic.004G018200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G188700 OST3/OST6 family protein, putative, expressed K12669: OST3, oligosaccharyltransferase complex subunit gamma
2 Sobic.006G181700 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
3 Sobic.007G019501 - K13448: calcium-binding protein CML
4 Sobic.009G156300 pleckstrin homology domain-containing protein, putative, expressed -
5 Sobic.010G039000 expressed protein -
6 Sobic.003G283300 expressed protein -
7 Sobic.009G077100 expressed protein -
8 Sobic.006G094500 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
9 Sobic.001G451901 - -
10 Sobic.002G336000 PB1 domain containing protein, expressed -
11 Sobic.001G408100 Yip1 domain containing protein, expressed -
12 Sobic.002G254650 - -
13 Sobic.009G187600 methyltransferase domain containing protein, expressed -
14 Sobic.010G066300 OsRCI2-8 - Putative low temperature and salt responsive protein, expressed -
15 Sobic.009G149200 - -
16 Sobic.001G110300 fb27, putative, expressed -
17 Sobic.007G022500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
18 Sobic.007G224300 RING finger protein, putative, expressed -
19 Sobic.009G232500 expressed protein -
20 Sobic.003G227200 mitochondrial import receptor subunit TOM7-1, putative, expressed K17771: mitochondrial import receptor subunit TOM7


Gene co-expression network
sample Sobic004G018200 Sobic004G018200 Sobic001G188700 Sobic001G188700 Sobic004G018200--Sobic001G188700 Sobic006G181700 Sobic006G181700 Sobic004G018200--Sobic006G181700 Sobic007G019501 Sobic007G019501 Sobic004G018200--Sobic007G019501 Sobic009G156300 Sobic009G156300 Sobic004G018200--Sobic009G156300 Sobic010G039000 Sobic010G039000 Sobic004G018200--Sobic010G039000 Sobic003G283300 Sobic003G283300 Sobic004G018200--Sobic003G283300 Sobic009G077100 Sobic009G077100 Sobic004G018200--Sobic009G077100 Sobic006G094500 Sobic006G094500 Sobic004G018200--Sobic006G094500 Sobic001G451901 Sobic001G451901 Sobic004G018200--Sobic001G451901 Sobic005G110526 Sobic005G110526 Sobic001G188700--Sobic005G110526 Sobic001G188700--Sobic004G018200 Sobic001G188700--Sobic006G094500 Sobic009G187600 Sobic009G187600 Sobic001G188700--Sobic009G187600 Sobic007G031100 Sobic007G031100 Sobic001G188700--Sobic007G031100 Sobic008G125000 Sobic008G125000 Sobic001G188700--Sobic008G125000 Sobic001G132900 Sobic001G132900 Sobic001G188700--Sobic001G132900 Sobic003G058900 Sobic003G058900 Sobic001G188700--Sobic003G058900 Sobic001G434400 Sobic001G434400 Sobic001G188700--Sobic001G434400 Sobic006G181700--Sobic004G018200 Sobic009G232500 Sobic009G232500 Sobic006G181700--Sobic009G232500 Sobic002G241500 Sobic002G241500 Sobic006G181700--Sobic002G241500 Sobic006G181700--Sobic003G283300 Sobic006G181700--Sobic001G132900 Sobic003G003000 Sobic003G003000 Sobic006G181700--Sobic003G003000 Sobic003G016400 Sobic003G016400 Sobic006G181700--Sobic003G016400 Sobic010G194200 Sobic010G194200 Sobic006G181700--Sobic010G194200 Sobic006G181700--Sobic001G188700 Sobic004G164000 Sobic004G164000 Sobic007G019501--Sobic004G164000 Sobic004G159000 Sobic004G159000 Sobic007G019501--Sobic004G159000 Sobic002G260200 Sobic002G260200 Sobic007G019501--Sobic002G260200 Sobic001G392800 Sobic001G392800 Sobic007G019501--Sobic001G392800 Sobic003G131300 Sobic003G131300 Sobic007G019501--Sobic003G131300 Sobic009G001900 Sobic009G001900 Sobic007G019501--Sobic009G001900 Sobic004G012800 Sobic004G012800 Sobic007G019501--Sobic004G012800 Sobic001G031800 Sobic001G031800 Sobic007G019501--Sobic001G031800 Sobic002G254650 Sobic002G254650 Sobic007G019501--Sobic002G254650 Sobic002G117200 Sobic002G117200 Sobic009G156300--Sobic002G117200 Sobic004G352900 Sobic004G352900 Sobic009G156300--Sobic004G352900 Sobic001G285000 Sobic001G285000 Sobic009G156300--Sobic001G285000 Sobic010G066300 Sobic010G066300 Sobic009G156300--Sobic010G066300 Sobic009G131100 Sobic009G131100 Sobic009G156300--Sobic009G131100 Sobic004G060600 Sobic004G060600 Sobic009G156300--Sobic004G060600 Sobic009G156300--Sobic002G254650 Sobic002G427900 Sobic002G427900 Sobic009G156300--Sobic002G427900 Sobic010G065400 Sobic010G065400 Sobic009G156300--Sobic010G065400 Sobic010G225201 Sobic010G225201 Sobic010G039000--Sobic010G225201 Sobic009G050000 Sobic009G050000 Sobic010G039000--Sobic009G050000 Sobic010G039000--Sobic009G077100 Sobic009G218000 Sobic009G218000 Sobic010G039000--Sobic009G218000 Sobic010G039000--Sobic010G194200 Sobic002G345000 Sobic002G345000 Sobic010G039000--Sobic002G345000 Sobic004G011433 Sobic004G011433 Sobic010G039000--Sobic004G011433 Sobic007G219500 Sobic007G219500 Sobic010G039000--Sobic007G219500 Sobic010G039000--Sobic001G031800 Sobic003G283300--Sobic001G451901 Sobic003G283300--Sobic002G241500 Sobic001G110300 Sobic001G110300 Sobic003G283300--Sobic001G110300 Sobic010G197900 Sobic010G197900 Sobic003G283300--Sobic010G197900 Sobic004G113700 Sobic004G113700 Sobic003G283300--Sobic004G113700 Sobic007G217400 Sobic007G217400 Sobic003G283300--Sobic007G217400 Sobic006G231500 Sobic006G231500 Sobic003G283300--Sobic006G231500 Sobic003G283300--Sobic009G001900 Sobic003G283300--Sobic006G181700 Sobic009G077100--Sobic001G031800 Sobic009G024500 Sobic009G024500 Sobic009G077100--Sobic009G024500 Sobic009G077100--Sobic009G050000 Sobic007G141100 Sobic007G141100 Sobic009G077100--Sobic007G141100 Sobic001G148700 Sobic001G148700 Sobic009G077100--Sobic001G148700 Sobic002G246800 Sobic002G246800 Sobic009G077100--Sobic002G246800 Sobic001G067601 Sobic001G067601 Sobic009G077100--Sobic001G067601 Sobic003G305100 Sobic003G305100 Sobic009G077100--Sobic003G305100 Sobic001G100400 Sobic001G100400 Sobic009G077100--Sobic001G100400 Sobic006G094500--Sobic009G187600 Sobic007G224300 Sobic007G224300 Sobic006G094500--Sobic007G224300 Sobic006G094500--Sobic001G188700 Sobic006G094500--Sobic001G451901 Sobic006G094500--Sobic001G434400 Sobic002G422400 Sobic002G422400 Sobic006G094500--Sobic002G422400 Sobic006G094500--Sobic004G018200 Sobic002G280900 Sobic002G280900 Sobic006G094500--Sobic002G280900 Sobic006G094500--Sobic007G031100 Sobic001G451901--Sobic001G110300 Sobic001G060300 Sobic001G060300 Sobic001G451901--Sobic001G060300 Sobic004G184000 Sobic004G184000 Sobic001G451901--Sobic004G184000 Sobic001G129400 Sobic001G129400 Sobic001G451901--Sobic001G129400 Sobic001G451901--Sobic003G283300 Sobic001G451901--Sobic010G194200 Sobic004G262300 Sobic004G262300 Sobic001G451901--Sobic004G262300 Sobic004G025300 Sobic004G025300 Sobic001G451901--Sobic004G025300 Sobic003G217100 Sobic003G217100 Sobic001G451901--Sobic003G217100
Octagon: transcription factors


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