Gene annotation
Transcriptome id Sobic.006G094500.1
Synonym Sb06g017920, SbTri19
Functional annotation Trihelix Family (PubMedID : 24864043)
transcription factor like protein, putative, expressed
UniProt C5Y986
Pfam PF13837
Panther DB PTHR31307 PTHR31307:SF12
NCBI CDD KOG4282; Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G14180 : sequence-specific DNA binding transcription factors
RAP-DB (Rice) LOC_Os04g36790.1 : transcription factor like protein, putative, expressed
MaizeGDB (Corn) Zm00025a056140 , Zm00025a020743 , Zm00025a011226
Brachypodium KQJ82806 , KQJ99950
Barley HORVU2Hr1G077940.3 , HORVU6Hr1G050140.1 , HORVU6Hr1G050140.2
Wheat TraesCS6D02G184500 , TraesCS6A02G198600
Populus -


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cDNA sequences
Sobic.006G094500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G187600 methyltransferase domain containing protein, expressed -
2 Sobic.007G224300 RING finger protein, putative, expressed -
3 Sobic.001G188700 OST3/OST6 family protein, putative, expressed K12669: OST3, oligosaccharyltransferase complex subunit gamma
4 Sobic.001G451901 - -
5 Sobic.001G434400 ufm1-conjugating enzyme 1, putative, expressed K12165: ufm1-conjugating enzyme 1
6 Sobic.002G422400 adenylate cyclase family protein, expressed -
7 Sobic.004G018200 glycine-rich protein 2, putative, expressed -
8 Sobic.002G280900 la domain containing protein, putative, expressed K18757: la-related protein 1
9 Sobic.007G031100 RNA polymerase II complex component SRB7, putative, expressed K15152: MED21, mediator of RNA polymerase II transcription subunit 21
10 Sobic.003G410200 ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed K04649: HIP2, ubiquitin-conjugating enzyme (huntingtin interacting protein 2)
11 Sobic.010G178800 solute carrier family 35 member B1, putative, expressed K15275: solute carrier family 35 (UDP-galactose transporter), member B1
12 Sobic.001G110300 fb27, putative, expressed -
13 Sobic.002G277300 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
14 Sobic.003G348200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
15 Sobic.010G079800 expressed protein -
16 Sobic.008G051400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
17 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
18 Sobic.001G408100 Yip1 domain containing protein, expressed -
19 Sobic.004G106700 WD domain, G-beta repeat domain containing protein, expressed K13341: PEX7, peroxin-7
20 Sobic.007G019501 - K13448: calcium-binding protein CML


Gene co-expression network
sample Sobic006G094500 Sobic006G094500 Sobic009G187600 Sobic009G187600 Sobic006G094500--Sobic009G187600 Sobic007G224300 Sobic007G224300 Sobic006G094500--Sobic007G224300 Sobic001G188700 Sobic001G188700 Sobic006G094500--Sobic001G188700 Sobic001G451901 Sobic001G451901 Sobic006G094500--Sobic001G451901 Sobic001G434400 Sobic001G434400 Sobic006G094500--Sobic001G434400 Sobic002G422400 Sobic002G422400 Sobic006G094500--Sobic002G422400 Sobic004G018200 Sobic004G018200 Sobic006G094500--Sobic004G018200 Sobic002G280900 Sobic002G280900 Sobic006G094500--Sobic002G280900 Sobic007G031100 Sobic007G031100 Sobic006G094500--Sobic007G031100 Sobic009G187600--Sobic006G094500 Sobic003G348200 Sobic003G348200 Sobic009G187600--Sobic003G348200 Sobic010G185100 Sobic010G185100 Sobic009G187600--Sobic010G185100 Sobic009G218000 Sobic009G218000 Sobic009G187600--Sobic009G218000 Sobic007G010200 Sobic007G010200 Sobic009G187600--Sobic007G010200 Sobic009G187600--Sobic001G188700 Sobic009G187600--Sobic002G422400 Sobic009G187600--Sobic007G031100 Sobic005G044100 Sobic005G044100 Sobic009G187600--Sobic005G044100 Sobic007G224300--Sobic006G094500 Sobic007G139900 Sobic007G139900 Sobic007G224300--Sobic007G139900 Sobic008G051400 Sobic008G051400 Sobic007G224300--Sobic008G051400 Sobic002G138700 Sobic002G138700 Sobic007G224300--Sobic002G138700 Sobic007G224300--Sobic009G187600 Sobic009G171100 Sobic009G171100 Sobic007G224300--Sobic009G171100 Sobic007G224300--Sobic004G018200 Sobic010G178800 Sobic010G178800 Sobic007G224300--Sobic010G178800 Sobic001G525400 Sobic001G525400 Sobic007G224300--Sobic001G525400 Sobic005G110526 Sobic005G110526 Sobic001G188700--Sobic005G110526 Sobic001G188700--Sobic004G018200 Sobic001G188700--Sobic006G094500 Sobic001G188700--Sobic009G187600 Sobic001G188700--Sobic007G031100 Sobic008G125000 Sobic008G125000 Sobic001G188700--Sobic008G125000 Sobic001G132900 Sobic001G132900 Sobic001G188700--Sobic001G132900 Sobic003G058900 Sobic003G058900 Sobic001G188700--Sobic003G058900 Sobic001G188700--Sobic001G434400 Sobic001G110300 Sobic001G110300 Sobic001G451901--Sobic001G110300 Sobic001G060300 Sobic001G060300 Sobic001G451901--Sobic001G060300 Sobic004G184000 Sobic004G184000 Sobic001G451901--Sobic004G184000 Sobic001G129400 Sobic001G129400 Sobic001G451901--Sobic001G129400 Sobic003G283300 Sobic003G283300 Sobic001G451901--Sobic003G283300 Sobic010G194200 Sobic010G194200 Sobic001G451901--Sobic010G194200 Sobic004G262300 Sobic004G262300 Sobic001G451901--Sobic004G262300 Sobic004G025300 Sobic004G025300 Sobic001G451901--Sobic004G025300 Sobic003G217100 Sobic003G217100 Sobic001G451901--Sobic003G217100 Sobic006G276200 Sobic006G276200 Sobic001G434400--Sobic006G276200 Sobic010G088300 Sobic010G088300 Sobic001G434400--Sobic010G088300 Sobic004G012800 Sobic004G012800 Sobic001G434400--Sobic004G012800 Sobic006G231500 Sobic006G231500 Sobic001G434400--Sobic006G231500 Sobic004G242100 Sobic004G242100 Sobic001G434400--Sobic004G242100 Sobic004G137900 Sobic004G137900 Sobic001G434400--Sobic004G137900 Sobic006G109700 Sobic006G109700 Sobic001G434400--Sobic006G109700 Sobic001G130400 Sobic001G130400 Sobic001G434400--Sobic001G130400 Sobic001G434400--Sobic005G110526 Sobic002G422400--Sobic009G218000 Sobic001G378200 Sobic001G378200 Sobic002G422400--Sobic001G378200 Sobic001G358500 Sobic001G358500 Sobic002G422400--Sobic001G358500 Sobic002G276800 Sobic002G276800 Sobic002G422400--Sobic002G276800 Sobic006G041800 Sobic006G041800 Sobic002G422400--Sobic006G041800 Sobic004G151200 Sobic004G151200 Sobic002G422400--Sobic004G151200 Sobic002G422400--Sobic001G451901 Sobic006G153200 Sobic006G153200 Sobic002G422400--Sobic006G153200 Sobic003G190600 Sobic003G190600 Sobic002G422400--Sobic003G190600 Sobic004G018200--Sobic001G188700 Sobic006G181700 Sobic006G181700 Sobic004G018200--Sobic006G181700 Sobic007G019501 Sobic007G019501 Sobic004G018200--Sobic007G019501 Sobic009G156300 Sobic009G156300 Sobic004G018200--Sobic009G156300 Sobic010G039000 Sobic010G039000 Sobic004G018200--Sobic010G039000 Sobic004G018200--Sobic003G283300 Sobic009G077100 Sobic009G077100 Sobic004G018200--Sobic009G077100 Sobic004G018200--Sobic006G094500 Sobic004G018200--Sobic001G451901 Sobic010G059700 Sobic010G059700 Sobic002G280900--Sobic010G059700 Sobic001G506000 Sobic001G506000 Sobic002G280900--Sobic001G506000 Sobic002G280900--Sobic007G031100 Sobic001G432100 Sobic001G432100 Sobic002G280900--Sobic001G432100 Sobic002G280900--Sobic004G151200 Sobic005G084900 Sobic005G084900 Sobic002G280900--Sobic005G084900 Sobic009G002000 Sobic009G002000 Sobic002G280900--Sobic009G002000 Sobic001G302900 Sobic001G302900 Sobic002G280900--Sobic001G302900 Sobic007G140600 Sobic007G140600 Sobic002G280900--Sobic007G140600 Sobic007G031100--Sobic007G010200 Sobic007G031100--Sobic001G432100 Sobic007G031100--Sobic002G280900 Sobic003G410200 Sobic003G410200 Sobic007G031100--Sobic003G410200 Sobic003G085500 Sobic003G085500 Sobic007G031100--Sobic003G085500 Sobic007G031100--Sobic001G188700 Sobic007G031100--Sobic002G422400 Sobic006G245700 Sobic006G245700 Sobic007G031100--Sobic006G245700 Sobic009G232500 Sobic009G232500 Sobic007G031100--Sobic009G232500
Octagon: transcription factors


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