Gene annotation
Transcriptome id Sobic.003G253500.1
Synonym Sb03g030880, SbTri21
Functional annotation Trihelix Family (PubMedID : 24864043)
transcription factor like protein, putative, expressed
UniProt C5XG36
Pfam PF13837
Panther DB PTHR31307 PTHR31307:SF10
NCBI CDD KOG4282; Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G14180 : sequence-specific DNA binding transcription factors
RAP-DB (Rice) LOC_Os01g48320.1 : transcription factor like protein, putative, expressed
MaizeGDB (Corn) Zm00025a028082 , Zm00025a038799 , Zm00025a044545
Brachypodium KQK09151 , KQK09152 , KQK04917 , KQK04918
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G253500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G525400 receptor-like protein kinase At3g46290 precursor, putative, expressed -
2 Sobic.009G171100 prenylated rab acceptor, putative, expressed -
3 Sobic.004G257300 GPI-anchored protein, putative, expressed -
4 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
5 Sobic.004G259600 slowmo homolog, putative, expressed -
6 Sobic.001G489600 expressed protein -
7 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
8 Sobic.010G030900 glycosyltransferase, putative, expressed -
9 Sobic.003G227200 mitochondrial import receptor subunit TOM7-1, putative, expressed K17771: mitochondrial import receptor subunit TOM7
10 Sobic.001G441000 erwinia induced protein 2, putative, expressed -
11 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
12 Sobic.007G188100 Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
13 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
14 Sobic.004G026200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.006G100700 expressed protein -
16 Sobic.001G370600 expressed protein -
17 Sobic.001G476400 - -
18 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
19 Sobic.006G263100 expressed protein -
20 Sobic.007G195701 - -


Gene co-expression network
sample Sobic003G253500 Sobic003G253500 Sobic001G525400 Sobic001G525400 Sobic003G253500--Sobic001G525400 Sobic009G171100 Sobic009G171100 Sobic003G253500--Sobic009G171100 Sobic004G257300 Sobic004G257300 Sobic003G253500--Sobic004G257300 Sobic004G280800 Sobic004G280800 Sobic003G253500--Sobic004G280800 Sobic004G259600 Sobic004G259600 Sobic003G253500--Sobic004G259600 Sobic001G489600 Sobic001G489600 Sobic003G253500--Sobic001G489600 Sobic001G173300 Sobic001G173300 Sobic003G253500--Sobic001G173300 Sobic010G030900 Sobic010G030900 Sobic003G253500--Sobic010G030900 Sobic003G227200 Sobic003G227200 Sobic003G253500--Sobic003G227200 Sobic001G525400--Sobic009G171100 Sobic001G525400--Sobic003G253500 Sobic002G353400 Sobic002G353400 Sobic001G525400--Sobic002G353400 Sobic007G188100 Sobic007G188100 Sobic001G525400--Sobic007G188100 Sobic001G370600 Sobic001G370600 Sobic001G525400--Sobic001G370600 Sobic002G330300 Sobic002G330300 Sobic001G525400--Sobic002G330300 Sobic007G011000 Sobic007G011000 Sobic001G525400--Sobic007G011000 Sobic003G338900 Sobic003G338900 Sobic001G525400--Sobic003G338900 Sobic003G392200 Sobic003G392200 Sobic001G525400--Sobic003G392200 Sobic009G171100--Sobic001G525400 Sobic001G441000 Sobic001G441000 Sobic009G171100--Sobic001G441000 Sobic009G171100--Sobic003G253500 Sobic004G259500 Sobic004G259500 Sobic009G171100--Sobic004G259500 Sobic001G408100 Sobic001G408100 Sobic009G171100--Sobic001G408100 Sobic009G171100--Sobic007G188100 Sobic009G171100--Sobic002G353400 Sobic009G171100--Sobic003G392200 Sobic009G182200 Sobic009G182200 Sobic009G171100--Sobic009G182200 Sobic004G257300--Sobic001G173300 Sobic004G257300--Sobic010G030900 Sobic009G208800 Sobic009G208800 Sobic004G257300--Sobic009G208800 Sobic002G294700 Sobic002G294700 Sobic004G257300--Sobic002G294700 Sobic008G177800 Sobic008G177800 Sobic004G257300--Sobic008G177800 Sobic004G036600 Sobic004G036600 Sobic004G257300--Sobic004G036600 Sobic006G205600 Sobic006G205600 Sobic004G257300--Sobic006G205600 Sobic004G286600 Sobic004G286600 Sobic004G257300--Sobic004G286600 Sobic004G257300--Sobic001G489600 Sobic010G228000 Sobic010G228000 Sobic004G280800--Sobic010G228000 Sobic006G263100 Sobic006G263100 Sobic004G280800--Sobic006G263100 Sobic002G118600 Sobic002G118600 Sobic004G280800--Sobic002G118600 Sobic001G290400 Sobic001G290400 Sobic004G280800--Sobic001G290400 Sobic004G280800--Sobic003G338900 Sobic004G025000 Sobic004G025000 Sobic004G280800--Sobic004G025000 Sobic004G280800--Sobic007G011000 Sobic004G053200 Sobic004G053200 Sobic004G280800--Sobic004G053200 Sobic001G189700 Sobic001G189700 Sobic004G280800--Sobic001G189700 Sobic004G247200 Sobic004G247200 Sobic004G259600--Sobic004G247200 Sobic002G348100 Sobic002G348100 Sobic004G259600--Sobic002G348100 Sobic003G063200 Sobic003G063200 Sobic004G259600--Sobic003G063200 Sobic005G168100 Sobic005G168100 Sobic004G259600--Sobic005G168100 Sobic001G055600 Sobic001G055600 Sobic004G259600--Sobic001G055600 Sobic009G232900 Sobic009G232900 Sobic004G259600--Sobic009G232900 Sobic002G372400 Sobic002G372400 Sobic004G259600--Sobic002G372400 Sobic010G204600 Sobic010G204600 Sobic004G259600--Sobic010G204600 Sobic005G028700 Sobic005G028700 Sobic004G259600--Sobic005G028700 Sobic001G051600 Sobic001G051600 Sobic001G489600--Sobic001G051600 Sobic006G095600 Sobic006G095600 Sobic001G489600--Sobic006G095600 Sobic001G077700 Sobic001G077700 Sobic001G489600--Sobic001G077700 Sobic002G203000 Sobic002G203000 Sobic001G489600--Sobic002G203000 Sobic007G057100 Sobic007G057100 Sobic001G489600--Sobic007G057100 Sobic004G280900 Sobic004G280900 Sobic001G489600--Sobic004G280900 Sobic001G476400 Sobic001G476400 Sobic001G489600--Sobic001G476400 Sobic009G071800 Sobic009G071800 Sobic001G489600--Sobic009G071800 Sobic001G489600--Sobic004G286600 Sobic001G516600 Sobic001G516600 Sobic001G173300--Sobic001G516600 Sobic001G173300--Sobic004G257300 Sobic001G173300--Sobic004G036600 Sobic001G173300--Sobic009G208800 Sobic001G084100 Sobic001G084100 Sobic001G173300--Sobic001G084100 Sobic010G065900 Sobic010G065900 Sobic001G173300--Sobic010G065900 Sobic007G151100 Sobic007G151100 Sobic001G173300--Sobic007G151100 Sobic009G027900 Sobic009G027900 Sobic001G173300--Sobic009G027900 Sobic001G173300--Sobic005G168100 Sobic010G030900--Sobic004G257300 Sobic002G248100 Sobic002G248100 Sobic010G030900--Sobic002G248100 Sobic010G030900--Sobic001G476400 Sobic003G150400 Sobic003G150400 Sobic010G030900--Sobic003G150400 Sobic009G184400 Sobic009G184400 Sobic010G030900--Sobic009G184400 Sobic003G296700 Sobic003G296700 Sobic010G030900--Sobic003G296700 Sobic010G030900--Sobic001G051600 Sobic010G030900--Sobic001G173300 Sobic007G180300 Sobic007G180300 Sobic010G030900--Sobic007G180300 Sobic008G088600 Sobic008G088600 Sobic003G227200--Sobic008G088600 Sobic004G012800 Sobic004G012800 Sobic003G227200--Sobic004G012800 Sobic003G227200--Sobic003G253500 Sobic009G191600 Sobic009G191600 Sobic003G227200--Sobic009G191600 Sobic006G099800 Sobic006G099800 Sobic003G227200--Sobic006G099800 Sobic003G227200--Sobic009G171100 Sobic003G227200--Sobic001G441000 Sobic001G148700 Sobic001G148700 Sobic003G227200--Sobic001G148700 Sobic010G201388 Sobic010G201388 Sobic003G227200--Sobic010G201388
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.