Gene annotation
Transcriptome id Sobic.004G331800.1
Synonym Sb04g036070
Functional annotation alginate regulatory protein AlgP, putative, expressed
UniProt A0A1Z5RQP7
Pfam -
Panther DB PTHR33670 PTHR33670:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G32020 : -
RAP-DB (Rice) LOC_Os02g55430.1 : alginate regulatory protein AlgP, putative, expressed
MaizeGDB (Corn) Zm00025a022484
Brachypodium KQK01165
Barley HORVU6Hr1G085880.7 , HORVU6Hr1G085880.6 , HORVU6Hr1G085880.5 , HORVU6Hr1G085880.3 , HORVU6Hr1G085880.8
Wheat -
Populus -


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cDNA sequences
Sobic.004G331800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G369500 NPL4, putative, expressed K14015: NPLOC4, nuclear protein localization protein 4 homolog
2 Sobic.002G417500 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
3 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
4 Sobic.001G285000 - -
5 Sobic.002G138700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
6 Sobic.001G410100 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
7 Sobic.002G207300 tetraspanin family protein, putative, expressed -
8 Sobic.009G149200 - -
9 Sobic.003G425200 Calmodulin-like protein 1(PubMedID : 24906815)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
10 Sobic.010G267500 bZIP orthologous(PubMedID : 28671251)@E2F-related protein, putative, expressed -
11 Sobic.001G287600 transcription factor MYC7E, putative, expressed K13422: transcription factor MYC2
12 Sobic.001G084000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY3, expressed -
13 Sobic.004G259500 expressed protein -
14 Sobic.009G171100 prenylated rab acceptor, putative, expressed -
15 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
16 Sobic.001G370600 expressed protein -
17 Sobic.009G028500 zinc finger family protein, putative, expressed -
18 Sobic.003G141000 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
19 Sobic.001G450700 RHsf 8/ Hsf 3(PubMedID : 27006630)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
20 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic004G331800 Sobic004G331800 Sobic003G369500 Sobic003G369500 Sobic004G331800--Sobic003G369500 Sobic002G417500 Sobic002G417500 Sobic004G331800--Sobic002G417500 Sobic004G086800 Sobic004G086800 Sobic004G331800--Sobic004G086800 Sobic001G285000 Sobic001G285000 Sobic004G331800--Sobic001G285000 Sobic002G138700 Sobic002G138700 Sobic004G331800--Sobic002G138700 Sobic001G410100 Sobic001G410100 Sobic004G331800--Sobic001G410100 Sobic002G207300 Sobic002G207300 Sobic004G331800--Sobic002G207300 Sobic009G149200 Sobic009G149200 Sobic004G331800--Sobic009G149200 Sobic003G425200 Sobic003G425200 Sobic004G331800--Sobic003G425200 Sobic004G060600 Sobic004G060600 Sobic003G369500--Sobic004G060600 Sobic003G077900 Sobic003G077900 Sobic003G369500--Sobic003G077900 Sobic009G131100 Sobic009G131100 Sobic003G369500--Sobic009G131100 Sobic001G428200 Sobic001G428200 Sobic003G369500--Sobic001G428200 Sobic007G091000 Sobic007G091000 Sobic003G369500--Sobic007G091000 Sobic001G428100 Sobic001G428100 Sobic003G369500--Sobic001G428100 Sobic007G044300 Sobic007G044300 Sobic003G369500--Sobic007G044300 Sobic010G267500 Sobic010G267500 Sobic003G369500--Sobic010G267500 Sobic003G277000 Sobic003G277000 Sobic003G369500--Sobic003G277000 Sobic002G184600 Sobic002G184600 Sobic002G417500--Sobic002G184600 Sobic002G417500--Sobic004G331800 Sobic003G422700 Sobic003G422700 Sobic002G417500--Sobic003G422700 Sobic003G424400 Sobic003G424400 Sobic002G417500--Sobic003G424400 Sobic010G265800 Sobic010G265800 Sobic002G417500--Sobic010G265800 Sobic006G197800 Sobic006G197800 Sobic002G417500--Sobic006G197800 Sobic003G290100 Sobic003G290100 Sobic002G417500--Sobic003G290100 Sobic007G124100 Sobic007G124100 Sobic002G417500--Sobic007G124100 Sobic009G028500 Sobic009G028500 Sobic002G417500--Sobic009G028500 Sobic009G010400 Sobic009G010400 Sobic004G086800--Sobic009G010400 Sobic003G416500 Sobic003G416500 Sobic004G086800--Sobic003G416500 Sobic006G259000 Sobic006G259000 Sobic004G086800--Sobic006G259000 Sobic004G065900 Sobic004G065900 Sobic004G086800--Sobic004G065900 Sobic002G323900 Sobic002G323900 Sobic004G086800--Sobic002G323900 Sobic001G489500 Sobic001G489500 Sobic004G086800--Sobic001G489500 Sobic010G102000 Sobic010G102000 Sobic004G086800--Sobic010G102000 Sobic004G086800--Sobic002G138700 Sobic001G287600 Sobic001G287600 Sobic004G086800--Sobic001G287600 Sobic009G156300 Sobic009G156300 Sobic001G285000--Sobic009G156300 Sobic004G352900 Sobic004G352900 Sobic001G285000--Sobic004G352900 Sobic010G066300 Sobic010G066300 Sobic001G285000--Sobic010G066300 Sobic001G321500 Sobic001G321500 Sobic001G285000--Sobic001G321500 Sobic005G229400 Sobic005G229400 Sobic001G285000--Sobic005G229400 Sobic002G117200 Sobic002G117200 Sobic001G285000--Sobic002G117200 Sobic001G285000--Sobic001G410100 Sobic003G296300 Sobic003G296300 Sobic001G285000--Sobic003G296300 Sobic001G530350 Sobic001G530350 Sobic001G285000--Sobic001G530350 Sobic002G138700--Sobic006G259000 Sobic001G084000 Sobic001G084000 Sobic002G138700--Sobic001G084000 Sobic007G090300 Sobic007G090300 Sobic002G138700--Sobic007G090300 Sobic002G138700--Sobic004G086800 Sobic002G138700--Sobic010G102000 Sobic001G195100 Sobic001G195100 Sobic002G138700--Sobic001G195100 Sobic002G138700--Sobic003G416500 Sobic002G138700--Sobic009G010400 Sobic002G138700--Sobic001G287600 Sobic001G410100--Sobic001G287600 Sobic001G410100--Sobic002G207300 Sobic003G341100 Sobic003G341100 Sobic001G410100--Sobic003G341100 Sobic007G011000 Sobic007G011000 Sobic001G410100--Sobic007G011000 Sobic009G100500 Sobic009G100500 Sobic001G410100--Sobic009G100500 Sobic002G118600 Sobic002G118600 Sobic001G410100--Sobic002G118600 Sobic009G044400 Sobic009G044400 Sobic001G410100--Sobic009G044400 Sobic007G212200 Sobic007G212200 Sobic001G410100--Sobic007G212200 Sobic001G410100--Sobic004G065900 Sobic002G207300--Sobic004G065900 Sobic002G367900 Sobic002G367900 Sobic002G207300--Sobic002G367900 Sobic007G201100 Sobic007G201100 Sobic002G207300--Sobic007G201100 Sobic006G146500 Sobic006G146500 Sobic002G207300--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G207300--Sobic001G118900 Sobic002G207300--Sobic003G425200 Sobic002G294600 Sobic002G294600 Sobic002G207300--Sobic002G294600 Sobic002G207300--Sobic001G410100 Sobic001G095700 Sobic001G095700 Sobic002G207300--Sobic001G095700 Sobic009G149200--Sobic004G331800 Sobic004G018200 Sobic004G018200 Sobic009G149200--Sobic004G018200 Sobic002G280600 Sobic002G280600 Sobic009G149200--Sobic002G280600 Sobic004G227300 Sobic004G227300 Sobic009G149200--Sobic004G227300 Sobic001G039800 Sobic001G039800 Sobic009G149200--Sobic001G039800 Sobic009G149200--Sobic009G156300 Sobic003G299000 Sobic003G299000 Sobic009G149200--Sobic003G299000 Sobic001G110300 Sobic001G110300 Sobic009G149200--Sobic001G110300 Sobic009G149200--Sobic001G285000 Sobic003G425200--Sobic006G146500 Sobic003G425200--Sobic003G341100 Sobic003G425200--Sobic007G201100 Sobic003G425200--Sobic002G207300 Sobic003G425200--Sobic007G011000 Sobic003G425200--Sobic004G065900 Sobic001G370600 Sobic001G370600 Sobic003G425200--Sobic001G370600 Sobic007G145700 Sobic007G145700 Sobic003G425200--Sobic007G145700 Sobic003G425200--Sobic002G118600
Octagon: transcription factors


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